Physeter macrocephalus (sperm whale): 102985235
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Entry
102985235 CDS
T06011
Symbol
UPF3A
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03013
Nucleocytoplasmic transport
pcad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102985235 (UPF3A)
03015 mRNA surveillance pathway
102985235 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102985235 (UPF3A)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102985235 (UPF3A)
mRNA cycle factors
P-body specific factors
102985235 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Bradykinin
Motif
Other DBs
NCBI-GeneID:
102985235
NCBI-ProteinID:
XP_023973225
Ensembl:
ENSPCTG00005004980
UniProt:
A0A2Y9SA88
LinkDB
All DBs
Position
13:81732542..81781103
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AA seq
570 aa
AA seq
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MRSEEGEGGPRVAVTTRGPSGKEKPSLTESHFRRESQRRDPEAPVASSSGCGGGAVKPRE
EKRIVLSKVVIRRLPPSLTKEQLGQQLHPLPAHDYFVLVTADLSLYPHLYSRAYINFRNP
DDILPFRDRFDGYIFTDSKGLEYPAVVEFAPFQKTAKKKLKKKDTQTGSIEDDPEYKKFL
ETYCVEEEKTSANPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKRGERRR
RELARKRLQEEEIRRRREEEKCKRKTAEKQKKTAEKEVRMKLLKKSEKGEESSTEKPKER
GEETDTRDGKQEPGPSCVVVKPKPLESSLEELREKPQDDTGKEQRDMERRFREKELEAQR
YHLDDSRKHRAHHELDKFSGRSEEELKRGNGFTPDRGKKGSQDGGGPVGAAETPGREKSE
DGLAPRKEDTGSKDRPGLQLYQPRGGIRARECDGRPPEEGRDGXGEVEDSAGAGAEKSEE
AGFLTAAQCHPNQERRRSEGLCCQACELANQISPDTDSKNNPVLLSQTLSPSALNISEKE
KLRDRLNYDRPSGSHPLXKKSLEFKSTCAS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcggaggagggagaggggggcccaagggtggccgttactacgcggggtccgagc
gggaaggagaagccgtcgctcacagaaagtcacttccgccgggagtctcagcggcgggat
cctgaagcgccggtagcctcgtcctccggctgtgggggcggtgcagtcaaacctcgcgag
gaaaagaggatagtcctcagcaaggtggtcatccggcggcttcctcctagcctcaccaag
gagcagctgggacagcagcttcaccccctgcccgcacatgattacttcgtgctcgttact
gctgacctcagtctttatcctcatctctattcaagagcatacattaattttagaaatcct
gatgacatcctgccttttagagatcgttttgatggatatatcttcactgacagtaaaggc
ctagaatatcctgcagtggtagaatttgctccattccagaagacagccaaaaagaagcta
aagaaaaaagacacccaaaccggaagcattgaagatgatccagaatataagaagttttta
gaaacttactgtgtggaggaggagaaaactagtgccaatcctgaaactcttctgggagac
atagaggcaaagacaagagaacttattgctagaagaaccacacctcttttggaatatatt
aaaaatagaaaattagaaaagcagagaattcgagaagaaaagcgaggagaacggaggagg
agagagttggcaaggaaacgcttacaggaagaagagataagaaggagaagggaagaggag
aaatgtaagaggaaaacagcagaaaaacagaagaaaactgctgagaaagaagtaaggatg
aagcttctcaagaaatcagaaaagggagaggagtcaagcactgagaagccaaaagaaaga
ggagaggaaactgacaccagagatgggaaacaggaacccggtcccagctgtgtagtcgtg
aagcccaagcccttggagagctcgctggaggagctcagggaaaagccacaagatgacact
ggtaaagagcaaagggacatggagagaagattccgagaaaaagaacttgaagcgcaaaga
taccacttggacgacagcagaaaacacagagctcaccatgagttggataagttttcagga
agaagtgaggaagagctgaaaagagggaatggattcaccccagaccgagggaagaagggg
agccaggatgggggcggccctgtgggggcagcagagacaccaggaagggagaagagtgaa
gatggactggcacccaggaaggaggacacgggaagcaaggaccgaccaggcttgcagctg
taccagcccagaggtggcatccgagcccgagaatgcgatggaagaccccccgaggagggc
cgtgacgggnnaggtgaggtggaagattcagcaggggctggagctgagaagagcgaagag
gcagggtttttgacagctgcccaatgtcatccaaatcaagaaaggagaagatctgaagga
ttatgttgtcaggcatgcgaactagcaaatcaaatttcccctgacacagattcaaagaat
aatccagtacttctttctcaaacactttctccatctgccctaaatatcagtgagaaagag
aaactgagagacagactaaattatgacaggccaagtggatcccatccactcntaaaaaag
tcacttgagtttaaaagcacctgtgcttcttaa
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