Physeter macrocephalus (sperm whale): 102987169
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Entry
102987169 CDS
T06011
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04151
PI3K-Akt signaling pathway
pcad04510
Focal adhesion
pcad04512
ECM-receptor interaction
pcad04820
Cytoskeleton in muscle cells
pcad04974
Protein digestion and absorption
pcad05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102987169 (COL6A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102987169 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102987169 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102987169 (COL6A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102987169 (COL6A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102987169 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcad04147
]
102987169 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102987169 (COL6A2)
Exosome [BR:
pcad04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102987169 (COL6A2)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102987169 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
102987169 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
102987169
NCBI-ProteinID:
XP_054942451
Ensembl:
ENSPCTG00005020074
UniProt:
A0A9W2WT60
LinkDB
All DBs
Position
8:15140578..15177574
Genome browser
AA seq
1027 aa
AA seq
DB search
MSGRTGAAKMLPGPCSALLLWALLGAVHAQQQEIISPGTSERNSCPEKADCPVHVYFVLD
TSESITMQSPTDSLLYHMQQFVLQFISQLQDELYLDQVALSWRYGGLHFSDLVEVFSPPG
SDRASFTKSLQGISSFRRGTFTDCMLANMTQEVRRHVGKGVVNFAVIITDGHVTGSPCGG
IKLQAERAREEGIRLFAVPPNLKLNEQGLRDIANTPHELYRNNYATMRPDSTEIDQDTIN
RIIKVMKHEAYGECYKVSCLEIPGPPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEG
PIGFPGPKGVPGFKGEKGEFGAEGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDSGGRG
PDGYVGEAGSPGEPGDRGSKGDPGRPGRRGPPGENGAKGSKGYQGNTGAPGSPGLKGAKG
GPGPRGPKGEPGRRGDPGSKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKANRGLPG
PRGPQGTVGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGP
RGPEGSRGDFGSKGEPGRKGQKGESADPGPPGEPGPRGQRGAPGPEGEPGPPGDPGLTEC
DVMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDP
KSETGTRVGVVQYSHDGTFEAIQLDDERIDSLASFKEAVKSLEWIAGGTWTPSALKFAYN
QLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCNHDVTVTAIGIGDMFHEKHESENL
YSIACDKPHQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPDLPCQTELYVAQCTQRPV
DIVFLLDGSERLGEQNFDKARRFVEEVSRRLTLARRDDDPLNARVALLQFGGPLEQQVAF
PLTSNLTVIQEALASARYLNSFSHVGAGIVHAINQVVRGARPGARRHAELDFVFLTDGVT
GNDSLEEAVHSMRKQNVVPTVVAVGGDVDADVLSKISLGDPAAVFREKDYDSLAQPGFFD
RFIRWIC
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggcgcacgggcgctgccaagatgctcccaggcccctgctccgccctcctgctc
tgggccctcctgggggccgtccacgctcagcagcaggagatcatcagccccggcacctcc
gagaggaacagctgcccagagaaggccgactgcccggtccacgtgtacttcgtgctggac
acgtcggagagcatcaccatgcagtcccccaccgacagcctgctctaccacatgcagcag
ttcgtgctgcagttcatcagccagctgcaggacgagctctacctggaccaggtggccctg
agctggcgctacggcggcctgcacttctccgacctggtggaggtgttcagcccgcccggc
agcgaccgcgcctccttcaccaagagcctgcagggcatcagctccttccgccgcggcacc
ttcactgactgcatgctggccaacatgacccaggaggtccggcggcacgtgggcaagggg
gtggtcaacttcgcggtgatcatcaccgatggccacgtcacgggcagcccgtgcgggggc
atcaagctgcaggcggagcgggcccgcgaggagggcatccggctcttcgcggtgccgccc
aacctgaagctgaacgagcagggcctgcgggacatcgccaacacgccgcacgagctctac
cggaacaactacgccaccatgcggcccgactccaccgagatcgaccaggacaccatcaac
cgcatcatcaaggtcatgaaacatgaagcctacggagagtgctacaaggtgagctgtctg
gagatccccgggccccccggccccaagggctaccgcggacagaagggcgccaagggcaac
atgggtgagcccggagagcctggacagaaggggcgacagggagatccaggcatcgaaggc
cccattggattcccaggacccaagggtgttcctggtttcaaaggagagaagggcgagttt
ggagccgaagggcggaagggcgcccccggcctggcgggcaagaacgggacggatggacag
aagggcaagttggggcgcatcggacctcctggctgcaagggagactccgggggtcggggc
ccggatggttacgtgggggaagccggcagccctggggagccaggagatcgaggctccaag
ggggaccctggccgccccggacgcagagggcccccgggggaaaacggggcaaaaggaagc
aagggctaccaaggcaacaccggagccccaggaagtcccggcctgaaaggagccaagggt
gggcctgggccccgaggccccaaaggcgagcccgggcgcaggggagaccctggaagcaag
ggcagcccaggcagcgatggccccaagggcgagaagggggaccctggccctgaggggccc
cggggcctggctggagaggttggcaacaaaggagccaaggcaaaccgaggtttacctgga
cccagaggtccccaggggactgttggagagcccgggaagcagggatctcggggagaccct
ggggacgctggcccccgcggagactcgggacagcctggccccaagggagaccccggcagg
cctggcttcagctacccgggaccccgaggagcgcctggagagaaaggcgagcctggcccc
cgcggccccgaggggagcagaggagactttgggtccaaaggagagcccgggaggaaaggc
cagaagggcgagtctgcagatcctggtccccctggcgagccaggcccgcggggccagaga
ggagcgccaggacccgagggagagcctggccccccaggagaccccggcctcacggagtgc
gacgtcatgacctacgtgagggagacgtgcgggtgctgtgactgtgagaagcgctgtggc
gctctggacgtggtgttcgtcatcgacagctccgagagcatcggctacaccaacttcacc
ctggagaagaacttcgtcatcaacgtggtcaacaggctgggggccatcgccaaggacccc
aagtcggagacggggacccgcgtgggcgtcgtgcagtacagccacgacggcaccttcgag
gccatccagctggacgacgagcgcatcgactcactggccagcttcaaggaggccgtcaag
agccttgagtggatcgcgggcggcacctggacgccctcggccctcaagttcgcctacaac
cagctcatcaaggagagccggcgccagaagacccgcgtgttcgcggtggtcatcacggac
ggccgccacgacccccgcgacgacgacctcaatctgcgggcgctgtgcaaccacgacgtg
acggtgacggccatcggcatcggggacatgttccacgagaagcacgagagcgagaacctg
tactccatcgcctgcgacaagccgcaccaggtgcgcaacatgacgctcttctccgacctg
gtggccgagaagttcatcgacgacatggaggacgtgctgtgcccggacccccagatcgtg
tgcccggaccttccctgccaaacagagctgtacgtggcccagtgcacgcagcggcccgtg
gacatcgtcttcctcctggacggctccgagcggctgggcgagcagaacttcgacaaggcg
cggcgcttcgtggaggaggtgtcccggcggctgaccctggcgcgcagggacgacgacccg
ctcaacgcgcgcgtggcgctgctgcagttcggaggcccgctcgagcagcaggtggccttc
ccgctgacctccaacctgaccgtcatccaggaggcgctggctagcgcgcgctacctcaac
tccttctcgcacgtgggcgcgggcatcgtgcacgccatcaaccaggtggtgcgcggcgcg
cggcccggggcgcgccgccacgccgagctggacttcgtgttcctcacggacggcgtcacg
ggcaacgacagcctggaggaggcggtgcactccatgcgcaagcagaacgtggtgcccacc
gtggtggccgtgggcggcgacgtggacgcggacgtgctctccaagatcagcctgggcgac
ccggccgccgtcttccgcgagaaggactacgacagcctggcccagcctggcttcttcgac
aggttcatccgctggatctgctag
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integrated database retrieval system
