Physeter macrocephalus (sperm whale): 102987285
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Entry
102987285 CDS
T06011
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X2
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102987285 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102987285 (LIG3)
Enzymes [BR:
pcad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102987285 (LIG3)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102987285 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
102987285
NCBI-ProteinID:
XP_007105663
Ensembl:
ENSPCTG00005013330
UniProt:
A0A2Y9EP84
LinkDB
All DBs
Position
14:98714373..98735924
Genome browser
AA seq
1032 aa
AA seq
DB search
MLNVHLFVYIFREFRASPTRTYFNFPSHPVSCMTLAFKILLPPTLRALSQKELCLFREQH
HWPDIRQFSRWSETVLRGHRLFQRRKPVVSFQESNLRPRATCLVFLPGSHVGLCSGPCEM
AEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLE
RARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKAGNTPKKKAVVQAKLTATGQV
TSPVKGASFVTNTNPRKFSGFSAKPNNSGEAHSSPTPKTSLSSSKCDPKHKDCLLREFRK
LCAMVAENPSYNTKTQIIQDFLQKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVK
LFSRIFNCNSDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLT
KEDEQQQALRDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLH
DVVERVLRNEQEVKKEPGRKRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIK
YDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDSKR
GKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLFERRKFLHDNMVEIPNRI
MFSEMKQVAKASDLADMINRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMAD
TADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATLARLQKELDMV
KISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCT
RIRDDKDWKSATDLPQLKELYQLSKERAAFAIVAGDEGSSTTGGSSGENEGTSGPAVSHE
APRTSPKQPSASAKKAGGKLSSSNSKGGNKLAAKPSPVRVGEKRKAPDETPCQAKVLLDI
FTGVRLYLPPSTPDFSRLRRYFVAFDGDLAQEFDVASATHVLGSRDKNPAAQQVSPEWIW
ACIRKRRLVAPC
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgtgcacctttttgtatacatcttcagggagttcagagcctcccccacaagg
acttattttaattttcccagccatcccgtgagctgtatgactttggcttttaagatcctc
ttaccaccaactctccgtgcgctcagccaaaaagaactgtgcctattccgagaacaacat
cactggcctgacataagacagttcagccggtggtcagaaacagttcttcgtggacaccgc
ctctttcagagaagaaagcctgttgtgtcattccaggaaagcaatctaagaccacgtgcc
acctgccttgttttcttgccagggtcgcatgtgggactctgcagtggcccctgtgagatg
gcagagcaacggttctgtgtggactatgccaagcgtggcacagccggctgcaaaaaatgc
aaggaaaagattgtaaagggcgtgtgccgaatcggcaaggtggtgcccaatcccttttca
gagtcagggggcgatatgaaagagtggtaccacattaaatgcatgtttgagaaactggag
cgggcccgggccaccacaaaaaaaattgaggacctcacagagctggaaggctgggaagag
ctggaagataatgagaaagaacaaataagccagcacattgcagatctgtcttccaaggca
ggaaacacaccaaagaagaaagctgttgtccaggctaagttgacagccactggccaggtg
acatctccagtgaaaggtgcctcatttgtcaccaataccaatccccggaaattttctggc
ttttcagcgaagcccaacaactctggggaagcccactcaagccctacccctaagacaagt
ctgtcctcaagcaaatgtgaccctaagcacaaggattgtctgctacgtgagtttcggaag
ttgtgtgccatggtggctgaaaatcctagctacaacacgaagacccagatcatccaggac
ttccttcagaaaggctcagcaggagatggtttccacggtgacgtgtacctaacagtgaag
ctgctgctgccgggtgttattaagagtgtttacaacttgaatgataagcagattgtgaag
cttttcagccgcatttttaactgcaactcagatgatatggcacgagacctagagcagggt
gacgtgtcagagacaatcagagtcttctttgagcagagcaagtccttccccccagctgcc
aagagccttcttaccatccaggaggtggatgaattcctcctgcgtctctccaagctcacc
aaggaggacgagcagcagcaggccctgcgggacatcgcctccaggtgtacagccaatgac
ctgaagtgcatcatcaggttgatcaaacatgatctgaagatgaactcgggtgcaaaacat
gtgttagatgccctagaccccaatgcctatgaagccttcaaagcctcgcgcaacctgcac
gatgtggtggagcgggtcctccgcaacgagcaggaggtgaagaaggagccaggccggaaa
cgagctctgagtgtccaggcctcactgatgaccccggtgcagcccatgctggccgaggcc
tgcaagtccatcgagtacgcgatgaagaaatgtccgaatggtatgttctctgagatcaag
tatgatggggagcgggtccaggtgcataagaacggggaccacttcagctacttcagccgc
agtctcaagccagtcctgccgcacaaggtggcccactttaaggactacatcccccaggct
ttccctgggggccacagcatgatcttggactctgaggtgctcctgatcgacagcaagaga
ggcaaaccactgccctttgggactctgggagtgcacaagaaagctgccttccaggatgct
aatgtctgcctgtttgtttttgattgtatctacttcaatgatgtcagcttgatggatagg
cctctgtttgagcggcggaagtttcttcacgataacatggttgaaattcccaaccggatc
atgttctcagaaatgaagcaagtcgcaaaagcttccgacttggctgacatgatcaaccgg
gtgatccaagaggggttggaagggctggtgctgaaggacgtgaagggtacatatgagcct
ggaaagcgtcattggctgaaagtgaagaaggactatttgaacgagggggccatggctgac
acagctgacctggtggtgcttggggccttctatgggcaagggagcaaaggtggcatgatg
tccatcttcctcatgggctgctatgacccgagcagccagaagtggtgcacggtcaccaag
tgtgcaggaggccacgacgacgcgacgctcgcccgcctacagaaggaactggacatggtg
aagatcagcaaggatcccagcaagatacccagctggctgaaaatcaataagatctactat
cctgacttcatcgttccagacccaaagaaagctgccgtgtgggagatcacaggggctgaa
ttctcaaaatctgaggctcacacagctgatgggatctccatccgtttccctcgctgcacc
cgaatccgtgatgataaggactggaagtctgccactgacctcccccaactcaaggaactg
taccagctctccaaggagcgggcggctttcgccatagtggccggagatgaggggagctcc
actacagggggcagcagcggagagaacgagggcacctcggggccagctgtgtctcacgag
gccccgagaacctcccccaagcagccctccgccagtgccaagaaggcgggagggaagctg
agtagctccaacagcaaaggcggcaacaagctggctgcaaagccttcccctgtgagagtg
ggagagaagcggaaggctcctgatgagaccccgtgccaagcaaaggtgctgctggacatc
ttcaccggggtgcggctctacctgccgccctccacgccagacttcagccgtctccgacgc
tactttgtggcattcgatggggacctggcacaggaatttgacgtggcctcagccacgcac
gtgctgggtagcagggacaagaaccctgcggcccagcaggtctccccggagtggatctgg
gcctgtatccggaaacggagactggtagctccctgctag
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