Physeter catodon (sperm whale): 102988692
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Entry
102988692 CDS
T06011
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
pcad
Physeter catodon (sperm whale)
Pathway
pcad04151
PI3K-Akt signaling pathway
pcad04510
Focal adhesion
pcad04512
ECM-receptor interaction
pcad04820
Cytoskeleton in muscle cells
pcad04926
Relaxin signaling pathway
pcad04933
AGE-RAGE signaling pathway in diabetic complications
pcad04974
Protein digestion and absorption
pcad05146
Amoebiasis
pcad05165
Human papillomavirus infection
pcad05200
Pathways in cancer
pcad05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102988692 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102988692 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102988692 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102988692 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
102988692 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
102988692 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102988692 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
102988692 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102988692 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
102988692 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102988692 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcad04147
]
102988692 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
pcad00536
]
102988692 (COL4A4)
Exosome [BR:
pcad04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102988692 (COL4A4)
Glycosaminoglycan binding proteins [BR:
pcad00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102988692 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102988692
NCBI-ProteinID:
XP_028338109
Ensembl:
ENSPCTG00005011988
UniProt:
A0A455APU9
LinkDB
All DBs
Position
2:complement(127551803..127708080)
Genome browser
AA seq
1686 aa
AA seq
DB search
MALVRRSFRWIKPLATDSWSLILILFSVQHAYGGGKKFIGPCGGRDCSLCQCFPEKGSRG
QPGPPGPQGPIGPLGPPGPIGIPGEKGMRGDSGLPGAAGEKGDKGPTGVPGFPGLDGIPG
HPGPPGSRGKSGIDGYNGSRGAPGLPGERGALGPQGSPGLLGKKGEKGNSVFILGVIKGI
QGDRGDPGPPGLPGPRGARGPAGPVGYPGESGLAGPPGPPGSPGLKGNPGVGVKGQMGDP
GEVGQQGSPGPTLLVQPPDSGLYKGEKGIKGTPGITGPPGPPGPKGEPGIGTKGEKGIPG
FPGPRGDPGSYGSPGFLGLKGEPGVFGDPGPFGFLGPKGDPGDRGHPGPPGVLATPALPL
KGPPGDPGHPGRYGETGAVGPPGPPGPPGRPGEVCAGMMGPPGPRGFSGHPGFPGAAGIP
ARADSAPGKPGNQGPPGLPGEPGLPGPPGSDVVYCSAGPPGPRGIKGKVGPPGRRGSKGE
KGSTGLCACQPGPSGPPGAPGLPGRQGSKGDLGLPGRLGEKGYAGLPGARGPPGPPGKPG
TSGPPGSKGEKGDLVVSRVKGHKGERGPDGPPGFPGQQGQHGQDGYAGEKGDPGPLGDHE
DAAPGDKGPPGPPGPPGRAGPRGPPGLGFPGPPGERGQPGAPGCPGKRGPDGWKGQKGDT
IPCNVTYPGRPGPPGFDGPPGPKGFPGRRGAPGLRCLDGEKGQRGKPGISEIPGPPGFHG
DMGDPGFGGEKGSSPVGPPGSPGLPGMNGQKGPPGDSAIGYPGPPGKRGLLGVPGSKGLR
GDPGRPGAAGPAGMPGFPGLKGPKGREGSAGFPGIPGPPGHSCERGAPGRPGPPGLPGAP
GSPGAPGWKGQQGGMGPPGPAGMKGLPGVPGRPGADGPPGPPGVPGPTGDDALPGLPGPK
GPQGLPGFLGFPGERGKPGPDGHPGRKGEHGEKGWPGSLGDGGVKGDKGARGPPGYEGEM
DIISIKGETGEPGPPGDGGFPGEEGDKGHPGIPGKKGEPGSCGPPGFHRGEPGRNGQPGL
PGPPGPPGSPGLRGLIGFPGFPGDQGEPGSPGPPGLSGIDGTRGPKGYKGEPASQFGLPG
PKGEPGSPGYPGHLGAPGEQGLPGVQGPGGPPGRPGPPGSSGPAGCPGNPGLPGLQGHPG
EMGDPGPRGLVGDPGTPGLPGIKGPSGSPGLNGLHGLKGQKGSKGTSGSHKTGPPGPVGM
PGPKGETGDPGSPGISPPGLFGDKGPPGPPGRPGPPGPAGAPGRALKGDIPDPGLPGDQG
PPGPDGPRGIPGPPGPPGIVDLLKGEPGDCGLPGPPGPPGPPGPPGRKGFPGCDGKDGQK
GPMGFPGLQGPPGTPGPPGEKGLPGPPGRQGPSGPPGSRGEPGPPADLDACPRIPGLPGI
PGPRGPEGAMGLPGTRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPGHRGDAGEAGCSGVP
GPPGPVGDPGPKGFGPGYLSGFLLVLHSQTDGEPTCPTGMPRLWTGYSLLYLEGQEKAHS
QDLGLAGSCLPMFSTLPFAHCNIHQVCQYARRNDRSYWLASTAPLPVTPLSEEEIRPYIS
RCAVCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLE
DFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPATLKESQAQRQKISRCQ
VCVKHS
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggcattggtaaggcgctctttcaggtggatcaagcccttggccacagattcctggtcg
ctcatacttattctcttttctgtacaacatgcgtacgggggtggaaagaagtttattggt
ccctgcgggggaagagattgctctctttgccagtgctttcctgaaaaggggtctcggggt
caaccaggaccaccagggccacagggtcctattggacccctggggccaccaggacccatt
ggaattccaggagagaaagggatgagaggtgacagtggtcttcctggggcagcaggtgaa
aagggtgataagggtccaaccggtgttcctggattcccaggtttggatgggatacctggg
cacccagggcctcctggatccagaggtaaatctggcatagatggctacaatggctcaaga
ggtgctccagggcttccaggagaaagaggagctcttggcccacaaggctccccaggcctt
cttgggaaaaaaggagaaaaaggaaattcagtgttcattttaggtgtcattaaaggtatt
cagggtgacagaggggacccaggacctcccggcttaccaggcccaaggggcgcgagagga
ccagcaggcccagtgggatatccaggagagtcagggttagcgggacctccaggccctcct
gggagtccgggtttgaagggtaatcctggcgtgggagtaaaggggcaaatgggagacccg
ggtgaggttggccaacagggttctccaggacccacccttctggtgcagccacctgattct
ggtctctataaaggagaaaagggtattaaaggaacgcctggaatcactggacctcccgga
ccaccaggacccaagggggaacccggtattgggacaaaaggagagaaaggtattcctgga
tttccaggacctcggggggaccctggctcctatggatctccaggttttctaggattaaag
ggggaaccaggtgtgtttggagatcctgggccatttggatttcttggtccaaagggagat
cctggagaccgtgggcacccaggaccaccaggggttttggcaactccagctcttccactc
aaaggccctccaggggatccagggcaccctggccgctatggagaaacgggggctgttgga
ccacctggtccccctggtccccctggtagaccaggggaagtctgtgcaggcatgatggga
ccccctgggccacgagggttttctggtcatccaggatttccaggggcagctggtattcct
gcgagagctgattctgctccaggaaaaccaggcaaccagggaccacctgggttgcctgga
gagccagggttgccgggacctccaggatcagatgttgtgtattgtagtgctgggcctcct
ggaccacgaggaataaaaggcaaagtgggtcctccaggaagaagaggctcaaaaggagaa
aaaggaagcacagggctctgtgcctgccagcctggtccctcaggcccacccggcgctcca
ggacttcctgggaggcaagggagtaaaggagacttgggactccctgggcggcttggagaa
aaaggttacgcaggccttcctggtgccagaggacctccagggccaccaggaaaacctggt
acctcaggaccacctggcagcaaaggagaaaaaggtgacctggttgtatcaagagtgaaa
gggcacaaaggagaaagaggtcctgatgggcccccaggatttccagggcagcagggacaa
cacggtcaagatggatatgctggagaaaaaggggacccaggaccgctgggagatcatgaa
gatgcagccccaggtgataaagggcctcctggaccaccaggccccccgggcagagcagga
cccagggggcctccaggactgggatttcctggtccaccaggagagagagggcaaccagga
gctccaggctgcccaggcaagcggggccctgatggctggaagggtcagaaaggtgataca
attccttgtaatgtaacctaccctgggaggccaggcccaccaggttttgatggacctcca
ggtccaaagggatttccaggtcgtcggggagctcctgggttgaggtgtttggatggggaa
aagggtcaacgtggcaaaccaggaatctcagaaatacctggtccacctggttttcatggt
gatatgggagatccaggttttggaggtgaaaaggggtcctcccctgtcggacccccaggc
tctccaggtttacctggaatgaatggtcagaaaggacctccaggagactctgctattggc
tacccaggacccccaggaaagaggggtcttttaggagtaccagggtcaaaaggactcaga
ggtgatcctggacgaccgggggctgcagggccagctggcatgcccggattcccgggtctc
aaaggtcccaaagggagagagggaagcgctgggtttccagggatcccaggtccacccggc
cattcctgtgaaagaggcgctccagggagaccagggccaccagggctccctggagctcca
ggaagtccaggtgccccaggttggaaaggacaacaagggggcatggggcctcctggaccc
gctggaatgaagggcctccccggagtcccaggacggccaggggcagatggacccccaggg
cccccgggagtcccaggccccactggggatgatgcgctacctggtcttccaggcccaaag
ggaccccaggggctgcccggcttcctgggttttccgggagagagaggaaaacctgggcca
gacggacaccctggcagaaagggagaacacggagaaaagggttggcccggctccctggga
gacggaggagtgaaaggtgacaaaggagcaagaggacccccaggatatgaaggagaaatg
gatattatttctataaagggggaaaccggggaacctggacctcctggagatggtggattc
ccaggagaagaaggtgataaaggccatcctgggataccagggaagaaaggagagccggga
agctgtggaccacctggatttcacagaggggagcccgggaggaatgggcagccaggcctt
cctggacccccaggccctccaggctcacctgggctgagagggctcattggctttccagga
tttccaggtgaccagggtgagccaggttctccagggccccctggactttcaggaattgat
ggtacaagaggacctaaaggatacaaaggggaacctgcaagtcagtttggcctacctggt
ccaaagggtgagcccggtagccctggatatccaggacatttgggagcacctggagagcag
ggcttgcccggtgttcaaggacctggaggaccacccggaaggccaggaccacctggctcc
tccggaccagcggggtgtccaggtaatccagggctgcctgggctgcagggacatccagga
gaaatgggggatcctgggccaagaggcctcgtgggggatccagggacaccaggtcttccg
ggaataaaaggtccctccgggtcgcccggcctgaacggcttgcacggtttaaagggtcag
aaaggcagcaaaggcacttcaggttcccataaaacgggcccacctggtccagtgggaatg
cccgggccaaaaggcgagacaggagaccccgggagcccaggaatttctcctcccggactt
ttcggagacaaaggtcccccaggtcccccagggagacctggaccgcctggtcctgcaggt
gccccaggaagagctcttaagggtgacattccggacccaggtctgcctggagatcaggga
cctcctggccccgatggtccaagaggaatacccgggcctccagggccccctgggattgtt
gaccttctgaaaggtgaaccaggtgactgtggtctgccagggcctccaggtcccccaggc
ccgccaggccctccaggacgcaaaggcttcccaggatgtgatggaaaagatggccagaaa
ggaccaatgggattcccggggctgcaggggccacctggaactcctgggccacctggagag
aagggtttacctggacctccaggcagacaggggccctcgggtcccccaggttccagaggt
gaacctgggccccctgcagacttggatgcctgcccccgaatcccggggcttcctgggata
ccaggcccaagaggcccggaaggagccatggggctccctggaacgagaggccccccagga
ccagggtgcaaaggagagcccgggctggatggcaggagaggcgaggatggccttccaggg
tcccctgggcctccgggacacagaggtgacgcgggagaagcgggctgctcaggagtacca
ggccctcctgggcccgtgggggatcctgggcccaaagggtttggccctggatacctcagt
ggcttcctcctggttctccacagtcagacagatggagaacccacctgccccacgggcatg
cccaggctctggaccgggtatagtctgttatacctggaaggacaggagaaagctcacagt
caagaccttggtctggcgggctcctgccttcccatgttcagcacgctgcccttcgcccac
tgcaacatccaccaagtgtgccagtacgcccggaggaacgacaggtcctattggctggcg
agcaccgcgccgttgcccgtgacgccgctctcggaggaggagatccgcccgtacatcagc
cgctgcgccgtgtgcgaggcccccgcgcaagccgtggccgtgcacagtcaggaccagtcc
atcccgccgtgtccgcgggcctggaggagcctctggattgggtactctttcctgatgcac
acaggcgctggggaccaaggaggcggccaggccctcatgtcacccggcagctgcctggag
gatttcagagcggcaccgttcctggaatgccaaggacggcagggaacttgccactttttt
gcgaatgagtatagcttctggctgacaactgtgagacctgacttgcagttctcctccgca
ccctcaccggccaccttgaaagaaagccaagcccagcgccagaaaatcagcaggtgccag
gtctgtgtgaagcatagctag
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