Physeter macrocephalus (sperm whale): 102990133
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Entry
102990133 CDS
T06011
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03082
ATP-dependent chromatin remodeling
pcad04714
Thermogenesis
pcad05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102990133 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
102990133 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
102990133 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcad03021
]
102990133 (SMARCC1)
03036 Chromosome and associated proteins [BR:
pcad03036
]
102990133 (SMARCC1)
Transcription machinery [BR:
pcad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102990133 (SMARCC1)
Chromosome and associated proteins [BR:
pcad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102990133 (SMARCC1)
PBAF complex
102990133 (SMARCC1)
GBAF(ncBAF) complex
102990133 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
102990133
NCBI-ProteinID:
XP_007101304
Ensembl:
ENSPCTG00005016826
UniProt:
A0A2Y9EFK6
LinkDB
All DBs
Position
18:43848147..44031260
Genome browser
AA seq
1105 aa
AA seq
DB search
MAAAAGGGGLGATAGAVGLGGAAAAAGLAVYRRKDGGPTSKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDVEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPGKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDVYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAARAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEK
METDTDGQQPEKAENKGENEMDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKE
LTDTCKERESDIGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMMPGQPMPGRMMSTVAANIHPPGSGPTPPGMPPVPGNILGPRVPLSAPNGMYPPPPQQ
QPPPPPPADGVPPPPAPGPPASAAP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcggcgggctgggggcgacggcgggcgctgtgggtctggga
ggcgcggcggcggccgcgggcctggcagtttatcggcggaaggacgggggcccgaccagc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcatgcagatgctcctaccaataaaacactggctgggctg
gtggtacagctgctccagttccaggaagatgcctttgggaaacatgtcaccaacccggcc
ttcaccaaactccctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaaatataaaaatgaacagggatggcggaggtttgatctacag
aatccatcccgaatggatcgtaatgttgaaatgtttatgaacattgaaaaaacattggtg
cagagcaattgtctgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaacaaattgaaagatataatcaaacgacatcaggggacatttactgatgagaagtca
aaagcttcccaccacatttatccgtatccttcctcacaagaggatgaagagtggttgaga
cctgtgatgagaaaagacaagcaggtgttagtgcattgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgtggaaattgaagatccaccaattccagaa
aagccatggaaggttcatgcaaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcccgtgagttttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagatagaaaagcatcagct
aatgctcgaaagaggaaacattcaccttcccctccacctcccacacccacagaatcccgg
aagaagagcgggaagaaaggccaagctagtctttatgggaagcggagaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaacata
gaggaggtggttcttccaaaaaatgtaaacccaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtagcagatctagatgagcaggatgaagaaacagtcacaacaggagga
aaggaagatgaagatcctggcaaaggtgatcagagtcggtcagttgaccctggtgaagat
aatgtgacagagcagaccaatcacattattattcctagctatgcatcgtggtttgattat
aactgtattcatgtgattgaacggcgtgctcttcctgagtttttcaatggaaaaaacaaa
tccaagactccagagatatacttggcatatcgaaattttatgatcgacacataccgcctg
aatccccaggaatatttaaccagcactgcttgtcggaggaacttgactggagatgtatgt
gctgtgatgagggttcatgcctttttagagcagtgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggcaatgggacctcctccgactcctcatttcaatgtattagct
gataccccctctgggcttgtacctctacatcttcgatcacctcaggttcctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacgtttactccaagaaaaccttagcaaagagtaaaggtgctagtgctgga
agagaatggactgaacaggagacacttctgctgctggaggctctggagatgtataaggat
gattggaacaaagtgtcagaacatgttggaagtcgcacgcaggatgaatgcatcctccac
tttttgaggcttcccattgaggacccataccttgagaattctgatgcttccctggggccc
ctggcctaccagcctgtccccttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggatcctcgtgtggcatctgctgcagccagagcagctttggaa
gagttttctcgagtccgggaggaggtaccactggaattggtggaagctcacgtcaaaaaa
gtacaagaagcagcacgagcctctgggaaagtggatcccacctatggtttggagagcagc
tgcattgcaggcacagggccagatgagccagagaagcttgaaggagctgaagaggaaaaa
atggaaacagatactgatggtcagcagcctgaaaaggctgaaaacaaaggggagaatgaa
atggatgaaggtgataaagctcaagatggagaaaatgaaaaaaatagtgagaaagaacag
gatagtgaagttagtgaagataccaaatcagaagaaaaggagactgaagagaacaaggaa
ctcactgatacttgtaaagaaagagaaagtgatattgggaagaagaaagtagaacatgaa
atttctgaaggaaatgtagccacagccgcagcagctgctcttgcctcagctgcaaccaaa
gccaagcacttggctgccgtggaagagagaaagatcaagtctttggtagctctcctggtt
gagacacaaatgaagaaactggagatcaaacttagacattttgaggaactggaaaccatc
atggacagagagaaagaagctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggaacagctgaaatacgctgagttgcgagcccgacagcaaatggaacag
cagcagcatgggcagaaccctcaacaggcacaccagcactcaggagggcctggcctggca
ccactgggagcagcagggcaccctggcatgatgcctcatcagcagccccctccctaccct
ctgatgcaccaccagatgccgccacctcatccaccccagccaggtcagataccaggtcca
ggttccatgatgcctgggcagcccatgccaggccgcatgatgtccaccgttgcagccaac
atccacccccctgggagtggccctacccctcctggtatgcctccagtcccaggaaacatc
ttaggaccccgggtacccctctcggcacctaacggcatgtatccccctccgccgcagcag
cagccacctcctccaccacctgcagatggagtccctccgcctcccgctccaggcccacca
gcctcggctgcaccctag
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integrated database retrieval system
