Physeter macrocephalus (sperm whale): 102990379 Help Entry 102990379         CDS       T06011                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pcad  Physeter macrocephalus (sperm whale) Pathway pcad03030   DNA replication pcad03410   Base excision repair pcad03420   Nucleotide excision repair pcad03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pcad00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     102990379 (LIG1)    03410 Base excision repair     102990379 (LIG1)    03420 Nucleotide excision repair     102990379 (LIG1)    03430 Mismatch repair     102990379 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pcad03032]     102990379 (LIG1)    03400 DNA repair and recombination proteins [BR:pcad03400]     102990379 (LIG1) Enzymes [BR:pcad01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      102990379 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      102990379 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      102990379 (LIG1) DNA replication proteins [BR:pcad03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     102990379 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      102990379 (LIG1) DNA repair and recombination proteins [BR:pcad03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      102990379 (LIG1)    NER (nucleotide excision repair)     Other NER factors      102990379 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      102990379 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR PucR Motif Other DBs NCBI-GeneID:  102990379 NCBI-ProteinID:  XP_007112419 Ensembl:  ENSPCTG00005010166 UniProt:  A0A2Y9F150 LinkDB All DBs Position 17:12370051..12412274 Genome browser AA seq 921 aa AA seqDB search MQRSIMSFFQPKKEGKVKKPEKEISNSTRETESPPKVALKERNRVVPEGDSPVKRPGRKA ARVLGSEGEEEEEEAPKPPKSQPAPDSPQVSPPSPGTLPESSPSRSSTSPTVVSPSGIPK RRTARKQLSKRTFQDVLQEQGKDEDGGPEKKKKKEEEEEEELETPPESLTEPEGGKKKEA EEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRKP AIKKEAKEEGPSALRKDETKGHLDPSSYNPARNNYQPVEDACWKVGQRVPYLAVARTFEK IEEVSARLRMVETLSNLLRSVAALSPADLLPILYLSLNRLGPPQQGLELGIGDSILLKAV AQATGRQLESVRAAAAEKGDVGLVAESSRSTQRLMLPPPALTAAGVFTKFRDIAQLAGSA STAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPP AVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGV PLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGRY PDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLY AFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDS CEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGF LLAAYDEESEELQAICKLGTGFSDEELEEHHQRLQALVLPAPRSYVRADGAVAPDHWLDP SAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLYR KQSQIQKQQGAESDSDLEDFY NT seq 2766 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca gagaaggagatatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag gagcggaatagagtggtacctgagggcgactctccagtgaagaggccagggaggaaggcg gcccgggtcctgggcagcgaaggggaggaggaggaggaggaagcccccaagccccccaaa agccagcctgctccagattccccacaagtctcccctcccagtcctggcacactgcctgag agcagcccttcccgctccagcacctctcccacggtcgtctccccatcagggatcccgaag cgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagagcag ggcaaggatgaggacggaggacccgagaagaagaagaagaaggaggaggaggaggaagaa gaattagagacaccaccagaaagcctcacagagcctgaagggggcaagaagaaggaagca gaagaaggggaccagcccagatcaccccctgagcccctgaagacctccacaaagccccca acagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggccag gctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaagcca gcaatcaaaaaagaagcgaaagaagagggacccagcgctctgagaaaggacgagaccaag ggacacctggacccatccagctacaatcctgccaggaacaactaccagcccgttgaagat gcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgagaag attgaagaggtttctgcgcggctccggatggtggagacactgagcaacctcctgcgctcc gtggcggccctgtcgcctgctgacctcctccccatcctctacctcagcctcaaccgcctg gggccgccccagcagggcctggagctcggcattggcgacagcatcctcctcaaggcggtg gcccaggccacaggccggcagctcgagtcggtccgggccgcggcggccgagaagggcgac gtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccgcccgcc ctcaccgccgccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagcgct tccacagccaagaagatggacgtcatcaaaggcctctttgtggcctgccgccactcagaa gcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcagtcg gtgctggcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattcccccca gccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggaggag caaggcatgatcctgaagcagacgttctgcgaggtgcctgacctggaccggatcgtcccc gtgttgctggagcacggtctggagcggctcccggagcactgcaggctgagcccaggggtc cccctgaaaccaatgttggcccacccaacccggggcgtcagcgaggtcctgaggcgcttt gaggaggcagctttcacctgcgagtacaaatacgatggacagagggcacagatccatgtt ctggaaggcggggaggtgaagatcttcagcaggaatcaggaggacaataccggaaggtac cccgatatcatcagccgcatccacaagattaaactcccgtcagtcacatccttcatcctg gacgcggaagccgtggcttgggaccgggagaagaagcagatccagccattccaagtgctc accacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctgtac gccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccgacgc cggcagctgctccgggagaacttcgtggagacggagggcgagtttgtctttgccacctct ctggacaccaaggacacggaccagatcgccgagttcttggagcagtcggtgaaagactcc tgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaagagg tcgcacaactggctcaagctgaagaaggactacctcgacggcgtgggcgacaccctggac ctcgtcgtgatcggcgcctacctgggccggggaaagcgggccggccggtatgggggcttc ctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcggaacg ggcttcagtgacgaggagctggaggagcaccaccagaggctccaggccctggtgctgccc gccccacgctcgtatgtccgggccgacggtgccgtggcccccgaccactggctggacccc agcgccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctacccggctgcc cggggcctggtggatagcgagaagggaatctccctccgcttccctcggtttatctgcgtc cgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtaccgg aagcaaagtcagattcagaagcagcaaggcgcagagtcagactctgacctggaagatttc tactag

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