Physeter macrocephalus (sperm whale): 102990523
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Entry
102990523 CDS
T06011
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102990523 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102990523 (XAB2)
03041 Spliceosome [BR:
pcad03041
]
102990523 (XAB2)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102990523 (XAB2)
Spliceosome [BR:
pcad03041
]
Complex B
Other components
Prp19-related factors
102990523 (XAB2)
Complex C
102990523 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
102990523
NCBI-ProteinID:
XP_007107164
Ensembl:
ENSPCTG00005010585
UniProt:
A0A2Y9ER40
LinkDB
All DBs
Position
2:complement(19412680..19423577)
Genome browser
AA seq
853 aa
AA seq
DB search
MVVMARLSRLERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGQKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAEQDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEMDLEPNEVRLEQQ
SVPAAVFGSLKED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcctctcgaggctggagcggccggaccttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaaatgctggctccgc
tacattgagtttaagcagggtgccccgaagcccagactcaatcagctgtatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcgcgccgggca
caggtgaagcatcgctgtgtgactgaccctgcctacgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctagattactgccagttcctg
atggaccagggacgcgtcacacacacgcgccgcactttcgaccgtgccctccgagcgttg
cccatcacacagcactctcgtatttggcccttgtacctgcgcttcctgcgctcacacccc
ctgcctgagaccgccgtgcgtggctaccggcgcttcctcaagctgagccccgagagtgcc
gaggagtacatcgagtacctcaagtcgagcgaccggctggacgaggccgcacagcgcctg
gccaccgtggtgaacgacgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccggacaaggtgcagtctctcagtgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccaactgggcaagctctggtgc
tcgctggccgactactacatccgcagcggtcacttcgagaaggctcgggacgtgtacgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagttcgaggagagcatgatcgcggcgaagatggagactgcctcggagctgggccgggag
gaggaggacgacgtggacctggagctgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgtccgagggagatcattaacacgtacacggag
gccgtgcagacggtggaccccttcaaggccaccgggaagccccacaccctgtgggttgcg
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgcgtcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcatgagaactacgaccaggccttgcggctgctgcgaaaggcgacg
gcgctgcccgcccgccgcgccgagtacttcgacggctcagagcccgtgcagaaccgcgta
tacaagtctctgaaggtgtggtcgatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaagctgtctacgaccgcatcctggacctgcgcatcgccacgccccaaatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaagagagcttcaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagtacctac
ctgaccaagttcatcgcccgctacgggggccagaagctggagcgggcacgggacctgttt
gagcaggcgctggatggctgccctcccaaatacgcaaagaccctgtacctgctgtacgcg
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtacgagcgtgccacc
agggccgtggagcccgcccagcaatacgacatgttcaacatctacatcaagcgggcggcc
gagatctacggggtcacccacacccgcagcatctatcagaaggccatcgaggtgctgtca
gacgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaagctcggggag
atcgaccgcgcccgggccatctacagcttctgctcgcagatctgtgacccccggacgacc
ggggccttctggcagacgtggaaggacttcgaggtccggcatggcaacgaggacaccatc
cgggagatgctgcggatacgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcccagatgctcaaggtgtcgggcagcgccacgggcactgtgtccgacctggcc
cccgggcagagcggcatggacgacatgaagctgctggaacagcgggccgagcagctggcg
gctgaggctgagcaggaccagccctcgcgggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggccgagctggcccagcaggccaacccagaggagatcgag
ctgggcgaggacgaggacgagatggacctggagcccaatgaggtgcgtctggagcagcag
agcgtgccggccgccgtgttcgggagcctgaaggaagactga
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