Physeter macrocephalus (sperm whale): 102990727
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Entry
102990727 CDS
T06011
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03013
Nucleocytoplasmic transport
pcad05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102990727 (NDC1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102990727 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
102990727 (NDC1)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102990727 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
102990727
NCBI-ProteinID:
XP_007128222
Ensembl:
ENSPCTG00005022815
UniProt:
A0A2Y9FSH9
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All DBs
Position
4:139105197..139150523
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AA seq
706 aa
AA seq
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MGPSGGLPPFELRWRVGSLYPAPFRVGAAITMATAASRLCAGGPRDILWRVLGWRIVTSI
VWSVLLLPICTTVFVIFSSIDLFHPIRWLCDSFSDLYSSYIIFYLLLLSVVIVIINIFNV
EFYTVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMMMAWCATVITKGQYSFLVVPCTA
SESLDSPAAQTCLNEYHLFFLLAGAFMGYSYSLLYFINNMNYLPFPIIQQYKFLRFRRSL
LLLVKHSCVESLFLLRNFCIVYYFLGHIPKAWISTAMDLQLDEQFHRPLDTVSGLLNLSL
LYHVWLCGVFVLMTWYISWILFKIYATEAHLFPVQPPFSEESDECLPKVLNSNPPLIIKY
LALQDLMLLSQYSPSRRQEVFSLSQPGGHPHSWTAISRECLNLLNDMTQKLVLYQEAAAT
NGRVMSSSYPVEPKKLNSPEETTFQTPKSSQMPRPSVPSLIKTSLFSSKLSTPDVASPLA
TPLGSSVVNRMAGIFDVNTCYGSPQSRQLTRRGPRLWTSASGQQMTEYSNPSPSTSVSAE
GKTVRQPNVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGL
SHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVDTSYK
TLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggggccctcggggggccttcctccctttgaactgcggtggcgggtgggctcactgtat
cctgcacctttcagagtaggggccgccatcaccatggccactgctgcgagtcggttgtgc
gccggcgggccgcgggacatcttgtggcgcgttttgggctggaggatagttacaagtatt
gtctggtcagtgctgcttctgcccatctgtaccacagtatttgtcatcttcagcagcatt
gatttatttcatcctatacggtggctgtgtgattctttcagtgatctgtatagttcctat
ataatcttttaccttctgctgctgtcagtggtaatagtaataataaatattttcaatgtg
gagttctatacagttgtgccttccattccctgctcgagactggcactgatagggaagatc
attcatcctcagcagctcatgcactcctttattcatgctgcaatgggaatgatgatggct
tggtgtgctacggtgataaccaagggtcaatacagttttcttgtggttccctgcactgct
tctgagagcttagatagccctgctgcacaaacctgcttaaatgagtatcacctttttttt
ctgctggctggagcatttatgggctatagctatagcctcctgtattttattaacaacatg
aactatcttccatttcccatcatacagcaatacaagttcttgcgcttcaggaggtctctg
cttttgctagttaagcatagctgtgtggaatcgctgttcctgcttagaaatttctgcatt
gtgtattattttcttggccacattcccaaagcttggattagcactgctatggaccttcag
ttagatgagcagtttcataggcctcttgacactgtgagtggcctcttgaatctctcatta
ctctaccatgtctggctctgtggtgtctttgtcctgatgacttggtacatctcgtggatc
ctcttcaaaatctatgccacagaggctcatctgttccctgttcaaccaccattttcagaa
gagtcagatgaatgcctcccgaaagttttaaacagcaatcctcccctcatcataaagtat
ttggccttgcaggacctgatgttgctttctcaatattctccttcacgaagacaagaagtc
tttagccttagccagccaggtggacatccccacagttggacagccatttcaagagagtgt
ttgaatcttttaaatgatatgactcagaaacttgtactctaccaagaagctgctgctaca
aatgggagagtgatgtcttcatcctacccagtggaacctaagaaattgaattctccagaa
gaaactacttttcaaacccccaaatctagccagatgcctcggccttcagtgccatcatta
attaagacatcgctgttctcctcaaaattgtccacacctgatgttgcaagtcccctggcg
accccacttggctctagtgtagtgaatcggatggctgggatttttgatgtaaacacgtgc
tatgggtcacctcaaagtcgtcagcttacaagaagagggccaagattatggacttcggct
tctggtcagcaaatgactgaatattctaatccttctccatctacctctgttagtgctgag
ggtaagacagtgagacagcccaatgtgatttattcatggattcagaataaacgtgaacag
attaagaatttcttatcaaaacgggtgctgataatgtattttttcagtaagcacccagag
gcctccattcaggctgttttttcagatgcccaaatgcatatttgggcattagaaggtctg
tctcacttagtagcagcatcatttacagaagatagatttggagttgtccagactacacta
ccagctattcttaatactttgttgacgctacaagaggcagttgacaagtacttcaagctt
cctcatgcttccagtaaaccacctcggatttcaggaagcctagtggacacttcttataaa
acattaagatttgcctttagagcatcactaaaaactgccatctatagaataactactaca
tttggtgaacatctgaatgctgtgcaagcatctgcagaacatcagaaaagacttcaacag
ttcttggagttcaaagaatag
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