KEGG   Physeter macrocephalus (sperm whale): 102990727
Entry
102990727         CDS       T06011                                 
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
pcad  Physeter macrocephalus (sperm whale)
Pathway
pcad03013  Nucleocytoplasmic transport
pcad05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102990727 (NDC1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    102990727 (NDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcad03019]
    102990727 (NDC1)
Messenger RNA biogenesis [BR:pcad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     102990727 (NDC1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 102990727
NCBI-ProteinID: XP_007128222
Ensembl: ENSPCTG00005022815
UniProt: A0A2Y9FSH9
LinkDB
Position
4:139105197..139150523
AA seq 706 aa
MGPSGGLPPFELRWRVGSLYPAPFRVGAAITMATAASRLCAGGPRDILWRVLGWRIVTSI
VWSVLLLPICTTVFVIFSSIDLFHPIRWLCDSFSDLYSSYIIFYLLLLSVVIVIINIFNV
EFYTVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMMMAWCATVITKGQYSFLVVPCTA
SESLDSPAAQTCLNEYHLFFLLAGAFMGYSYSLLYFINNMNYLPFPIIQQYKFLRFRRSL
LLLVKHSCVESLFLLRNFCIVYYFLGHIPKAWISTAMDLQLDEQFHRPLDTVSGLLNLSL
LYHVWLCGVFVLMTWYISWILFKIYATEAHLFPVQPPFSEESDECLPKVLNSNPPLIIKY
LALQDLMLLSQYSPSRRQEVFSLSQPGGHPHSWTAISRECLNLLNDMTQKLVLYQEAAAT
NGRVMSSSYPVEPKKLNSPEETTFQTPKSSQMPRPSVPSLIKTSLFSSKLSTPDVASPLA
TPLGSSVVNRMAGIFDVNTCYGSPQSRQLTRRGPRLWTSASGQQMTEYSNPSPSTSVSAE
GKTVRQPNVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGL
SHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVDTSYK
TLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE
NT seq 2121 nt   +upstreamnt  +downstreamnt
atggggccctcggggggccttcctccctttgaactgcggtggcgggtgggctcactgtat
cctgcacctttcagagtaggggccgccatcaccatggccactgctgcgagtcggttgtgc
gccggcgggccgcgggacatcttgtggcgcgttttgggctggaggatagttacaagtatt
gtctggtcagtgctgcttctgcccatctgtaccacagtatttgtcatcttcagcagcatt
gatttatttcatcctatacggtggctgtgtgattctttcagtgatctgtatagttcctat
ataatcttttaccttctgctgctgtcagtggtaatagtaataataaatattttcaatgtg
gagttctatacagttgtgccttccattccctgctcgagactggcactgatagggaagatc
attcatcctcagcagctcatgcactcctttattcatgctgcaatgggaatgatgatggct
tggtgtgctacggtgataaccaagggtcaatacagttttcttgtggttccctgcactgct
tctgagagcttagatagccctgctgcacaaacctgcttaaatgagtatcacctttttttt
ctgctggctggagcatttatgggctatagctatagcctcctgtattttattaacaacatg
aactatcttccatttcccatcatacagcaatacaagttcttgcgcttcaggaggtctctg
cttttgctagttaagcatagctgtgtggaatcgctgttcctgcttagaaatttctgcatt
gtgtattattttcttggccacattcccaaagcttggattagcactgctatggaccttcag
ttagatgagcagtttcataggcctcttgacactgtgagtggcctcttgaatctctcatta
ctctaccatgtctggctctgtggtgtctttgtcctgatgacttggtacatctcgtggatc
ctcttcaaaatctatgccacagaggctcatctgttccctgttcaaccaccattttcagaa
gagtcagatgaatgcctcccgaaagttttaaacagcaatcctcccctcatcataaagtat
ttggccttgcaggacctgatgttgctttctcaatattctccttcacgaagacaagaagtc
tttagccttagccagccaggtggacatccccacagttggacagccatttcaagagagtgt
ttgaatcttttaaatgatatgactcagaaacttgtactctaccaagaagctgctgctaca
aatgggagagtgatgtcttcatcctacccagtggaacctaagaaattgaattctccagaa
gaaactacttttcaaacccccaaatctagccagatgcctcggccttcagtgccatcatta
attaagacatcgctgttctcctcaaaattgtccacacctgatgttgcaagtcccctggcg
accccacttggctctagtgtagtgaatcggatggctgggatttttgatgtaaacacgtgc
tatgggtcacctcaaagtcgtcagcttacaagaagagggccaagattatggacttcggct
tctggtcagcaaatgactgaatattctaatccttctccatctacctctgttagtgctgag
ggtaagacagtgagacagcccaatgtgatttattcatggattcagaataaacgtgaacag
attaagaatttcttatcaaaacgggtgctgataatgtattttttcagtaagcacccagag
gcctccattcaggctgttttttcagatgcccaaatgcatatttgggcattagaaggtctg
tctcacttagtagcagcatcatttacagaagatagatttggagttgtccagactacacta
ccagctattcttaatactttgttgacgctacaagaggcagttgacaagtacttcaagctt
cctcatgcttccagtaaaccacctcggatttcaggaagcctagtggacacttcttataaa
acattaagatttgcctttagagcatcactaaaaactgccatctatagaataactactaca
tttggtgaacatctgaatgctgtgcaagcatctgcagaacatcagaaaagacttcaacag
ttcttggagttcaaagaatag

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