Physeter macrocephalus (sperm whale): 102992940
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Entry
102992940 CDS
T06011
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad04068
FoxO signaling pathway
pcad05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
102992940 (RAG1)
09160 Human Diseases
09163 Immune disease
05340 Primary immunodeficiency
102992940 (RAG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcad04121
]
102992940 (RAG1)
Enzymes [BR:
pcad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102992940 (RAG1)
Ubiquitin system [BR:
pcad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102992940 (RAG1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1
RAG1_ZnC2
RAG1_DNA-bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_10
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
102992940
NCBI-ProteinID:
XP_007106929
Ensembl:
ENSPCTG00005013675
UniProt:
A0A2Y9EQ27
LinkDB
All DBs
Position
16:88415100..88418231
Genome browser
AA seq
1043 aa
AA seq
DB search
MAVSLPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKAPENAQAEKQDSSEGKPSLE
QSPAVLDKPGGQTPALTQLALKPHPKFLKKSHDDRKARDKAMHQANLRHLCRICGNPFKA
DGHNRRYPVHGPVDGKTQVLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
SFMHRKFSSAPCEAYSPRNATMEWSSHTTSCGVCHIARQGLKRKGHQPSTQLSKKLRTVI
DRAREVRRRKRRAQARISSKELMKKVANCSKIHLSTQLLAVDFPAHFVKSISCQICEHIL
ADPVETSCKHVFCRICILRCLKVMGSYCPSCRYPCFSTDLESPVKSFLSILNTLTVKCPA
KECNEEVSLEKYNHHVSSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
FADKEEGGDVKAVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRSAEKVLLPGYHPFEWQPPLKNVSSSTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILAGMRDQDLDDYLNGPFTVVVKE
SCDGMGDVGEKHGSGPAVPEKAVRFSFTIMKITIAHGSQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSKLMLEMGGILRTFKFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHVDNLERYEVWRSNPYHETVEELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPSASKEERRRWQAALDKHL
RKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
PAKECPASLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKYYEMEDVLKHHWLYTSKYLQKFMNAHNALKTSGFTIN
SQGSLGDSLDLENSPESQDSMEF
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctctttgccacccaccctgggactcagttccgccccagatgaaatccagcac
ccacatattaaattttcagaatggaaatttaagctattcagggtgagatcctttgaaaag
gcacctgaaaatgctcaggcggaaaagcaagattcctccgaggggaaaccctctctagaa
caatctccagcagtcctggacaagcctggtggtcagacaccagctctgactcaactggca
ttgaagccccacccaaagtttctgaagaaatcccatgatgacaggaaagcaagagacaaa
gccatgcaccaagccaacctgcgacatctctgccgcatctgcgggaatcctttcaaagct
gatgggcacaataggagatacccagtccatgggcctgtggatggtaagacccaagtcctt
ttacgaaagaaggaaaagagggccacgtcctggccagacctcattgccaaggttttccgg
atcgatgtgaaggccgatgtggactcgattcatcccactgagttctgccataactgctgg
agcttcatgcacaggaagtttagcagtgccccatgtgaggcttactccccaaggaatgca
accatggaatggtcctcccacacaacatcctgtggcgtctgccacattgcccgtcaggga
ctcaagaggaagggtcatcagccaagcacgcagctcagcaaaaaactcagaacggtgatt
gaccgagctcgagaagtccgtcggcgcaagaggagagctcaggccaggatcagcagcaag
gaactgatgaagaaggtcgccaactgcagcaagatacatctcagtacccagctcctggca
gtggacttcccggcgcactttgtgaaatctatctcctgccagatttgtgaacacattctg
gcggaccctgtagagaccagctgtaagcatgtattttgcaggatctgcattctcagatgc
ctcaaagtcatgggaagctattgtccttcttgccggtacccctgcttctctactgacctg
gagagtccagtgaagtcttttctgagcatcttgaataccctgacggtgaaatgtccagcc
aaagagtgcaatgaggaggtcagcttggaaaaatataatcaccacgtctcaagccacaag
gaatcgaaagagactttcgtgcatattaataaagggggccggccccgccagcatctcctg
tccctgacccggagggctcagaagcaccgtctgcgggagctcaagctgcaagtcaaggct
ttcgctgacaaagaagaaggtggggatgtgaaggcagtgtgcctgaccttgttcctgctg
gctctgagggcaaggaatgagcacagacaagccgacgagctggaggccatcatgcaggga
cggggctccggcctgcagccggctgtttgtttggccatccgtgtcaacaccttcctcagc
tgcagccagtaccacaagatgtacaggactgtgaaggccatcacagggaggcagattttc
cagcctttgcatgcccttcggagtgctgagaaggtccttctgccgggctaccaccccttt
gagtggcagccacctctgaagaacgtgtcttccagcactgacgtgggcattattgatgga
ctgtctggactgtcctcctctgtggacgattacccggtggacaccatcgccaagcgcttc
cgctatgattcagctttggtgtctgctctgatggacatggaggaagacatcctggcgggc
atgagagaccaagaccttgacgactacctgaatggccccttcaccgtagtggtgaaggag
tcctgtgatgggatgggagacgtgggcgagaagcacggcagtgggccagcagttccggaa
aaggcagttcggttttccttcacgatcatgaaaatcaccatcgctcacgggtcacagaat
gtgaaggtgtttgaggaagccaagcccaactctgaactctgttgcaagcccttgtgcctc
atgctggcagatgagtctgaccacgagaccctgacggccatcctgagccctctcattgcc
gagagggaggccatgaagagcagcaaattaatgcttgagatgggaggcatcctccggact
ttcaagttcatctttaggggcaccgggtacgatgagaaacttgtccgggaagtggaaggc
ctcgaggcttcgggctcggtctacatttgtaccctttgtgatgccacccgcctggaagcc
tctcaaaatcttgtcttccactccatcaccagaagccacgtcgataatctggagcgctat
gaggtctggcgttccaacccataccatgagacggtggaggaactgcgggaccgggtgaag
ggggtctcggccaaacccttcattgagacggtcccttccatagatgcactccactgcgac
atcggcaacgcagctgaattctacaagattttccagctggagataggggaggtgtataag
aaccccagtgcctccaaagaagagaggagaagatggcaggctgccttggacaagcacctc
cggaagaagatgaatctgaaaccaatcatgaggatgaatggcaactttgccaggaagctc
atgaccaaagagacggttgaagcagtttgtgaattaattccctccgaggagaggcacgaa
gctctgagggaactaatggacctttatttgaagatgaaacccgtctggcgatcatcatgc
cctgctaaggagtgcccagcgtctctctgccagtatagtttcaattcacagcgttttgct
gagctcctctccactaagttcaagtatagatacgagggcaaaatcaccaattattttcac
aaaaccctggctcacgtccctgaaattattgagagggatggctccattggggcctgggca
agtgagggaaatgagtctgggaacaaactgttcaggcgcttccggaaaatgaatgccagg
cagtccaagtactacgaaatggaagatgtcttgaaacatcactggttgtatacctccaaa
tacctgcagaagtttatgaatgctcataatgcactgaaaacttcagggtttaccataaac
tcacagggaagcttaggggactcattagacctagagaactctccagaatctcaagattca
atggaattttaa
DBGET
integrated database retrieval system
