Physeter macrocephalus (sperm whale): 102994341
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Entry
102994341 CDS
T06011
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03020
RNA polymerase
pcad03420
Nucleotide excision repair
pcad05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102994341
09124 Replication and repair
03420 Nucleotide excision repair
102994341
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
102994341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcad03021
]
102994341
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102994341
Enzymes [BR:
pcad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102994341
Transcription machinery [BR:
pcad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102994341
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102994341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
102994341
NCBI-ProteinID:
XP_028347611
Ensembl:
ENSPCTG00005004031
UniProt:
A0A455BFT9
LinkDB
All DBs
Position
7:complement(48261330..48308822)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
AFLSIVLSRTPISFGTQDTVWPLRRHSSVYVFLLRQEVSMIRDIREREIRIYTDAGRICR
PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQ
EKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVR
MDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDR
GFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGD
DVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRV
RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE
CLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFI
GPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL
RERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELM
SMSIAPRMMSV
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaggatgatgatgaaatcacaccagat
ttgtggcaagaggcatgctggattgtaattagttcctattttgatgagaaaggcttggtc
agacaacagctggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctacaagcagaagctcagcatgctagtggagaagttgaagaa
ccgccaagatacttgctgaagttcgaacaaatttacctctccaagcctacccattgggaa
agagatggtgctccgtcaccgatgatgccaaatgaggccagattaagaaatctcacgtac
tctgctccactttatgttgatataacaaaaacagtcattaaagaaggcgaagaacaactt
cagacacagcatcagaaaacttttataggaaaaattccaattatgttacgttcaacttac
tgcctattgaatggcttaacagatcgtgatctttgtgagttaaatgaatgccccttggat
cctggtggctacttcattattaatggatctgaaaaggttctgattgctcaagagaaaatg
gcaacaaacacagtctatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcatgtctggagaattcttctcgacccaccagtactatctgggttagcatgctg
gcaagaggaggacagggtgcaaaaaagagtgctattggtcagcgcattgtggcaacccta
ccatatatcaagcaagaagttcccatcattattgtgttcagagcattaggttttgtgtct
gacagagatattttagagcatattatttatgattttgaagatccagagatgatggaaatg
gttaaaccttctctagatgaagcttttgtcattcaagaacagaatgtcgcactgaatttc
attggttcaagaggggcaaagcctggtgtcaccaaagagaaaagaattaaatatgcaaag
gaagtgttacagaaagaaatgctccctcatgttggcgtcagtgatttttgtgagaccaag
aaagcttatttcttggggtacatggttcataggttactgctagcagctttgggtagaaga
gaattagatgacagagatcactatggaaacaaaagattggaccttgctggaccactactt
gcattcttatttagaggaatgtttaagaatttgcttaaagaagtacggatctatgcccag
aagttcattgatcgaggaaaggattttaacttggagttggcaattaaaacaaggattata
tctgatggcctaaaatattctttagctactgggaactggggtgaccaaaagaaagctcat
caagccagagctggagtatctcaggtattaaaccgcctaacttttgcatctactctttct
cacctgcgtcgtttaaattctcccattggtagagatggcaagctagcaaaaccaagacag
ttgcataatacattgtggggaatggtgtgtcctgctgagactccagagggccatgctgta
ggacttgtgaagaatttagctctgatggcttatatttcagttggatctcaaccttctcca
attctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcaaccaagatttttgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaacactctacggaaattgaggcgtcagatggacatcattgtgtctgaa
gctttcctgtcaatagtcctctcaagaacacctatttcctttggaacacaagatactgtt
tggcctttgaggagacacagctcagtttatgtcttcctgttaagacaagaggtttctatg
atcagagatattcgagagagggagattcggatctatacagatgcaggccgtatttgtaga
ccacttctgattgtggaaaaacaaaagctacttttgaagaagagacacattgatcaattg
aaagagagagaatataacaattacagttggcaggatcttgtggccagtggggtagtagaa
tatattgatactctagaagaagaaacagtgatgctcgcaatgaccccagatgatttacag
gagaaagaagtagcttattgttccacatatacacactgtgagattcatccatcaatgatt
cttggtgtctgtgcatctattattccttttcctgatcataaccagtcccctagaaacaca
taccagtctgctatgggtaagcaggctatgggggtttatattaccaactttcatgttcgt
atggatacattggcccatgttctctattatcctcaaaaaccacttgtgactacacggtca
atggaatacctacgatttagagagctgccagcaggtatcaactcaattgtggccattgca
tcatacactggatataatcaagaagactctgttatcatgaatcgttcagctgtagaccga
ggctttttcaggtctgttttctatcgatcatacaaagaacaggagtctaaaaaagggttt
gatcaagaagaagtttttgagaagcctacacgtgaaacttgccagggtatgaggcatgct
atttatgacaagctggatgatgatggtttgatagctcctggggttcgtgtatcaggagat
gatgttattataggcaaaacagtcacgttgcctgaaaatgaagatgaattggagggcact
aatagacgctatactaagagagactgtagcacttttctcaggactagtgagacgggcatc
gtggatcaggttatggtaactctcaaccaagaaggatataaattttgtaaaataagggta
cgctctgttagaattccacagattggagacaaatttgctagtcgacatggtcaaaagggt
acttgtggtattcagtatagacaagaggatatgcctttcacctgtgaaggtatcaccccc
gatatcatcataaatccccatgccattccctctcgtatgactattggtcacttgattgaa
tgtcttcaagggaaggtatcagctaacaagggtgaaattggtgatgccactccattcaat
gatgctgttaatgtacagaagatttctaatcttttatctgattatggctaccatctcaga
ggaaacgaggtcctatacaatggattcactggtcgaaaaatcacatcacaaatttttatt
ggccccacttactaccagcgtttgaagcacatggtggatgataagattcattctcgtgct
cggggacctattcagatccttaatagacagcccatggagggtagatctcgtgatggtggc
ctgcgttttggagaaatggaacgagattgtcagattgcccacggagcagcccagttttta
agggaaagattgtttgaggcatcagatccatatcaggttcatgtttgcaatctttgtgga
ataatggcgatcgctaacaccaggacccatacatatgaatgcaggggctgccgaaataaa
acccagatctctttggtgcgaatgccttatgcatgcaaactgttatttcaggaactcatg
tctatgagtattgcacctcgaatgatgagtgtttag
DBGET
integrated database retrieval system
