Physeter macrocephalus (sperm whale): 102994456
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Entry
102994456 CDS
T06011
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad01524
Platinum drug resistance
pcad03430
Mismatch repair
pcad05200
Pathways in cancer
pcad05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102994456 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102994456 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
102994456 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
102994456 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcad03400
]
102994456 (MSH6)
DNA repair and recombination proteins [BR:
pcad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102994456 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
102994456
NCBI-ProteinID:
XP_007111682
Ensembl:
ENSPCTG00005012642
UniProt:
A0A2Y9EYL6
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Position
12:63806990..63824950
Genome browser
AA seq
1360 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNASKGPVRASSESAAAAAAGASPSPGGDAAWSEAGPGPGPLA
GSTSRAEARNLNGGLRKSAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSARVHVQFFDDSPTRGWVRRRLLKPYTGSKSKEAQKGGHFYSSKPEILRAMQRAD
EALNKDKIKRLELAVCDEPSEPEEEEETEAGATYASDKSEEENEIESEEEVRPKVQGSRR
SSRQIKKRRVISDSESDIGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVAPKR
KRMVTGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSAAQNSESQAHISGGCDDSS
RPTIWYHETLEWLKEEKRRDTHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQN
FDLVIFYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHISKFDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLL
SLKEKDDDSSGHARVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYSPVQVLFEKGN
LSVETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDSGVMLPQVLK
DMTSESDSVGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVRAT
RPGAVFAKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA
PLCNPYVISDRLDAIEDLMAVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDS
RAIMYEETTYSKKKIIDFLSALEGFKILCKIIGVMEEVIDDFKSKILKQVLILQTKNPEG
RFPDLTLELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRS
RIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLIN
AEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVIL
LPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGGK
STLMRQAGLLVVMAQMGCYVPAEVCRLTAIDRVFTRLGASDRIMSGESTFFVELSETASI
LTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNV
AVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKA
REFEKMTQSLRLFREVCLASERSTVDAEAVHKLLTLIEEL
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtctccagccctgaataatgcc
agcaaaggcccggttagggcctcaagtgaaagcgccgccgccgctgccgccggggcctct
ccttccccaggcggggatgcggcctggagcgaggccgggcctgggccggggcccctggcg
ggctccacttcgcgggccgaggcgaggaacctcaacggagggctgcggaagtcggcagcc
cctgcggtccccgccagttcttgtgacttctcaccaggtgacttggtttgggccaagatg
gagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattcatc
cgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaacaagg
ggctgggttagaagaaggctattaaagccatatacaggttcaaagtcaaaggaagcccag
aaaggaggtcatttctacagttcaaagcctgaaatactcagggcaatgcagcgtgcagat
gaagccttgaataaagacaagattaagaggcttgaattggcagtgtgtgatgagccctca
gaaccagaggaggaagaagagacagaggcaggtgccacttacgcatcagataagagtgaa
gaagaaaatgaaattgagagtgaagaggaagtgaggccaaaggtgcaaggatctaggcga
agtagccgccagataaaaaaacgaagggtcatatcagactctgagagtgacattggtggc
tctgatgtggaatttaagccagatgctaaggaggaaggaagcagtgatgaaataagcagt
ggagtaggggatagtgacagtgaaggcctggacagccctgtcaaagttgctccaaagagg
aagagaatggtaacgggaaatggctccctcaaaaggaaaagttcaaggaaggaaatgccc
tcagccaccaaacgagcaactggcatttcatcagaaaccaagaatactttgagtgctttc
tctgctgctcaaaattctgaatcccaagcccacattagtggaggatgtgatgacagtagt
cgccccaccatctggtatcatgaaactttagagtggcttaaggaagagaagagaagagat
acgcacaggaggcgacctgatcaccctgattttgatgcatccacgctctatgtgcctgag
gatttccttaattcctgtactcctgggatgaggaagtggtggcagattaagtctcagaac
tttgatcttgtcatattttataaggtggggaagttttatgagctgtaccacatggatgct
cttattggagtcagtgaactagggctggtattcatgaaaggcaactgggcccattctggt
ttccctgaaattgcatttggcagatattcagattccctggtccagaagggctataaagta
gcacgggtggaacagaccgagaccccggaaatgatggaggcacgatgccgaaagatggca
catatatctaagtttgatagagtggtgaggagggagatctgtagggtcattaccaagggt
acacagacctacagtgtgctggaaggtgacccctcagagaactacagtaagtaccttctt
agcctcaaagaaaaagatgatgattcttctggccacgctcgagtgtatggagtatgtttt
gttgatacctcgctagggaagttcttcataggtcagttttcagatgatcgccattgttcc
aggtttaggactttagtggcacactattctccagtacaagtcttgtttgagaaaggaaat
ctctcagtggaaactaagatgattctcaagggttcattatcctcttctcttcaggaaggt
ctgataccaggttcccagttttgggatgcagccaaaactttgagaactctccttgaagaa
ggatattttacagacaagttaaatgaggacagtggggtgatgttaccccaggtgcttaaa
gatatgacctcagagtctgattctgttgggttgacaccaggagagaagagtgaattggcc
ctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggagctt
ttatcaatggctaattttgaagaatatattcccttggattctgacacggtccgtgctaca
agacctggtgctgtctttgctaaagccaatcagcgaatggtgctagatgctgtgacatta
aacaacttggagatttttctgaatggaacaaatggttctactgaagggaccctgttagag
aagattgatacttgccatactcccttcggtaagcggctcctaaagcaatggctttgtgcc
ccactctgtaacccttatgttatcagtgatcgtctagatgccatagaagacctaatggct
gtgcctgacaaaatctctgaggttgtagaccttctaaagaagcttccagaccttgagagg
ctactgagtaaaattcataatgttggctctcccctgaagagccagaaccacccagatagc
agggctataatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctttct
gctctggaaggattcaaaatactatgtaaaattataggggttatggaagaagtcattgat
gactttaagtctaaaatccttaagcaggtccttattctgcagacaaaaaatcctgaaggc
cgctttcctgatttgactttagaactaaaccgatgggatacagcctttgaccatgaaaag
gctcgaaagactggactgattactcccaaagcaggatttgactctgattatgatcaagct
cttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgtagt
cgaattggctgtaggaccatagtctactggggaattggtaggaatcgttaccagttggaa
attcccgagaatttcatcactcgtaatttgccagaagaatatgagttgaaatctaccaag
aagggctgtaaacgatattggaccaaaacaattgagaaaaagttggctaatctgataaat
gctgaagaacggagagatgtatcattaaaggactgcatgcggcgactgttctataacttt
gataaaaattacaaggactggcaggctgctgtggagtgcatcgcagtgttggatgtctta
ttgtgcctggctaactacagtcgagggggtgatggtcctatgtgtcgtccagtaattctg
ttgccagaagaagatactcctccctttctagaccttaaaggatcacgccacccctgcatt
acgaagactttttttggtgatgactttattccaaatgacattctaataggctgtgaggaa
gaggaagaaaatggcaaagcttactgtgtacttgttactggaccaaatatggggggcaag
tctacgctcatgagacaggctggcctactagttgtaatggcccagatgggttgttatgta
ccagctgaagtgtgtaggctcacagcaatcgatagagtgtttactagacttggtgcctca
gacagaataatgtcaggtgaaagtacattttttgttgaattgagtgaaactgccagtata
cttacacatgcaacagcacattctctggtgcttgtggatgaattaggaagaggtactgca
acatttgatgggacagcaatagcaaatgcagttgttaaagaacttgccgagaatataaag
tgtcgtacattgttttctacccactaccattcattagttgaagactattctcaaaatgtt
gcagtgcgcctaggacacatggcatgcatggtagaaaatgaatgtgaagatcccagccag
gagaccattaccttcctgtataaattcattaaaggagcctgtcctaaaagctatggcttt
aatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacatagaaaagca
agagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgtctggctagt
gaaaggtcgactgtagatgctgaagctgtccataagttgctgactttgattgaggaacta
tag
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