Physeter macrocephalus (sperm whale): 102995208
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Entry
102995208 CDS
T06011
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pcad
Physeter macrocephalus (sperm whale)
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
102995208 (RC3H1)
04121 Ubiquitin system [BR:
pcad04121
]
102995208 (RC3H1)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
102995208 (RC3H1)
Ubiquitin system [BR:
pcad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102995208 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
102995208
NCBI-ProteinID:
XP_023989388
Ensembl:
ENSPCTG00005012388
UniProt:
A0A2Y9TGQ8
LinkDB
All DBs
Position
4:complement(44454833..44552636)
Genome browser
AA seq
1134 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAMLPDE
GAVDLPSRKTPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKSLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYPPPPQCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPTQIRPSYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFQQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMA
PQGAPTKSINISDYGPYGTHSGWGGSPYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNQQISQQTQLRGLEAVGSRLALQREASALAGQSQPPPPPPPPKWPGA
PSSEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDL
TLTFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDSNDSQRSGVTSSSAP
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaacaaactccatcgcaaggcttgcccgtttgaccagaccactatcaatacagac
attgaactcctcccagtaaactcagcattgctgcagctagtgggtgctcaggttcctgaa
cagcagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aagtgtgtagaagaattagcattgtacctgaaaccgctcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagctggtgactctg
gtccactgccaactagtagaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagctcattctccagcaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcctggccttagaagatggttctgctttgtcaagaaaa
gtattggttctttttgtggtgcaaaggttggagccacggtttcctcaagcctctaaaact
agcattgggcacgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagttgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccagtggtcctctttgctttatggggaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagaggacgggagatccagcaaacttgaatcgactaagaccccatttggagctatta
gcaaatattgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ctggttgctgtgcgtacagtggtacacgggttggttgattatatccagaatcacagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatacaaaacatacatgtgtcga
gacatgaaacagagaggaggatgccctcgtggggccagctgtacatttgcacactcacag
gaggaactggaaaagtttcgtaaaatgaacaaacgcctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatgcttccagatgaa
ggtgcagtggatctgcctagcagaaaaacccctgctctgccaaatgggattgtatcagca
gggaatacagtaacacagctgattccacgagggacagaccccagctacgattctagtctg
aaaccaggaaagatagatcacctgagcagtagtgcccctggatcccctcctgacctgcta
gaatctgtccctaagagtatttctgccttgcctgttaatccacatcctgtacctccaaga
gggccaacagacctgccccctatgcctgtcaccaaatcacttcagatggtaccacgaggt
tctcagttatatccagcacaacaggcagatgtttattaccaggatcctcgaggagctgct
ccaccatttgaaccagcaccttatcagcagggtatgtactatcctccaccaccacaatgt
gtgtcccgctttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat
cattattcaccgtacctccaagatcgtgtagtaaactctcaatatggcacacagccacaa
cagtacccacctatgtacccaccacactatgatggccgtcgagtataccctgctcagtct
tatacaagagaggagattttccgagaaagtcctatacccattgagataccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccaacagatggagggttactatcca
gtggctccccacccaactcaaatcagaccttcgtacaacagagagcctccttacagccgg
cttcctccccctccccagccccatcctagtctagatgagctacatcgaagacgaaaggaa
ataatggcacaactagaggaaaggaaggttatctctccacctccttttgcaccttcacca
acattgcctcctgccttccaacaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtactccccctggtcatgtgacaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaatgagagaccagcgattggaccttcagagaagagcagca
gaaaccagtgatgatgacctcatcccatttggagaccgaccaacagtatctcggtttggt
gccatttctcgaacttcaaaaacaatatatcagggtgctggcccaatgcaggctatggca
cctcagggagcgcccacaaaatctattaacatttcagattatggtccgtatggaacccac
agtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggccagtcatggaaaaccccttccatct
gctgagagggaacagctacgactagaattgcagcaattaaaccaacaaattagccaacag
acccagctacgtggactagaggctgtcggtagcaggctggcgctgcagagagaggcgagc
gccttggcaggccaatcacagcccccaccgccgccgccgccgccaaagtggcctggagcg
ccctcaagtgagcagctgagcttggaactgcaccaggtggaaagggaaatcgggaagaga
acccgggaactgagcatggagaaccagtgttctctggacatgaaaagcaaattgaataca
agtaagcaagcagaaaatggacaaccagaaccacaaaataaggttccagctgaggacctt
acattgacattcagtgatgtgccgaatggatcagccttgacacaagagaacatcagcctc
ctatcaaacaagaccagctctctgaacctgtcagaggaccctgagggaggaggggacagt
aatgactcccagagatcaggagttacatccagttctgctccctaa
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