Physeter macrocephalus (sperm whale): 112064785
Help
Entry
112064785 CDS
T06011
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1 isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
pcad
Physeter macrocephalus (sperm whale)
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
112064785 (SOX1)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112064785 (SOX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112064785
NCBI-ProteinID:
XP_023978993
Ensembl:
ENSPCTG00005020231
UniProt:
A0A2Y9SKR7
LinkDB
All DBs
Position
13:80387033..80388190
Genome browser
AA seq
385 aa
AA seq
DB search
MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGAGAKANQDRVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRR
KTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGAAAVGQRLESPGGAAAGGYAHVNG
WANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPHAHPHNPQPM
HRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAAAAAAA
SSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQS
RLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcccccacg
aacctgtcgggcccggccggggcgggcgggggcggcggtggcggcggcggcgcgggagcc
aaggccaaccaggaccgggtgaagcggcccatgaacgccttcatggtgtggtcccgcgga
cagcggcgcaagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgc
ctgggcgccgagtggaaggtcatgtccgaagccgagaagcggcctttcatcgacgaggcc
aagcggctgcgcgcgctgcacatgaaggagcacccggactacaagtaccggccgcgccgc
aagaccaagacgctgctcaagaaggacaagtactcgctggccggcgggctgctggcggca
ggcgcgggcggcggcggcgcggccgtggccatgggcgtgggcgtgggcgcggcggccgtg
ggccagcgcctcgagagcccgggcggcgcggcggccggcggctacgcgcacgtcaacggc
tgggccaacggcgcctaccccggctcggtggcggcggcggcggcggccgcggccatgatg
caggaggcgcagctggcctacgggcaacatccgggcgcgggcggcgcgcacccgcacgcg
cacccggcgcacccgcacccgcaccacccgcacgcgcacccgcacaacccgcagcccatg
caccgctacgacatgggcgcgctgcagtacagccccatctccaactcgcagggctacatg
agcgcctcgccctcgggctacggcggcctcccctacggcgccgcggccgccgccgccgcc
gccgcgggcggcgcgcaccagaactcggccgtggcggcggcggcggcggcggcggccgcg
tcgtcgggcgccctgggcgcgctcggctcgctcgtcaagtcggagccgagcggcagccct
ccggccccggcgcactcgcgggcgccgtgccccggggatctgcgcgagatgatcagcatg
tacttgccggccggcgagggcggcgacccggcggcggcggccgcagccgcggcgcagagc
cggctgcactcgctgccgcagcactaccagggcgcgggcgcgggcgtcaacggcacggtg
cccctgacgcacatctag
DBGET
integrated database retrieval system
