Pituophis catenifer annectens (San Diego gophersnake): 139308094
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Entry
139308094 CDS
T11059
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcae04147
]
139308094 (COL18A1)
00535 Proteoglycans [BR:
pcae00535
]
139308094 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pcae00536
]
139308094 (COL18A1)
Exosome [BR:
pcae04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139308094 (COL18A1)
Proteoglycans [BR:
pcae00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
139308094 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pcae00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139308094 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
DUF6538
DUF1554
Motif
Other DBs
NCBI-GeneID:
139308094
NCBI-ProteinID:
XP_070787637
LinkDB
All DBs
Position
Unknown
AA seq
1548 aa
AA seq
DB search
MARVIVSAWLLLMLLCCLANAQGWRNWFWSGSEETTLSPTKAAEAEDETSQDLSTPAATA
SPNAPFETTTDPEPRGKAGTIFTLKQPDFTPTVPVPAATSPSQEEGRERNITGVGVEILS
VAEGIQNLVQLLDEKTTDRMERTEVPATTETSASPAPVTEPGSIQNVTSNLTGDIQTSLK
TKKPEGATKLARLWNKDLALLWNKTRVFPKKPGKPRQENFSREVGLLELIGDPPPDQITK
IYGPDKSPAYVFSPDANAGQVARYHLPSPFYRDFSLLFYIQSTSDNAGVLFALTDASQSI
IYVGVKLSEVKDGKQQIIFYYTEPGSQNSNVAATFTVPSLVNLWTRFALSVRDYNVVLYM
DCEEFKMVHLERSSGKIELEEGAGLFVGQAGGADPDKYQGIIVELKIKDNPWAAGYQCVE
EDDDCDTCGGSGSGLDIKQPPSEKESVIPLLSKLPVPPPVTSPAIAKKPVQLEETEYTER
PTYVPASGTKGEKGDPGEKGDRGPKGDPGTGVLSTNGDKGEKGEKGELGIKGSAGFGYPG
SKGQKGEPGTTGLPGPIGPPGPPGTIMRHSDGSTVEGPGAMGPPGLPGKDGQPGKDGEPG
DPGEDGKPGDVGPQGFPGTPGEPGLKGEKGEPSVGARGPPGPPGLPGKPGLSSKVDKLTF
IDMEGSGFGSELESLRGPRGPPGPPGPPGVPGLPGQPGRFGTNGTDFPGLPGLPGVPGRN
GNSGIPGPPGPLGPPGKDGIPGQPGEKGAPGEPGEMGFPGAPGPEGNQGVPGFPGTPGEP
GLAGLPGPMGPRGLPGPPGPGIAAEFVDMEGSGFPLVSGGPGTRGPEGPPGLPGLPGLPG
PPGPKGDEGIIGLPGLPGEKGYPGLPGLDGRPGLEGFPGPQGQKGEEGSPGSKGEKGQDG
IGLPGPPGPPGQAVYLSSEDKTVPVLPGLEGPKGPKGDSGTPGLQGYPGLKGEKGEPGVV
TRPDGTILAAEAKGEKGEPGPSGPMGPGGPPGRYGRKGELGFPGRPGRPGMNGLKGEKGD
PADLSGALGLRGPPGPPGPPGPPGSPVPVYENNAFSDLGPPGPPGLPGYHGQKGEKGEQG
LPGPPGQFPYDLSRFSSTFRGERGDKGDPGMKGEKGESGGGSNAAGLPGPQGYPGLPGPK
GESIRGLPGPPGPQGPPGASFEGHPGPQGPPGPPGPPGPPSFPGPHRQHISIPGPPGPPG
PPGPPGISDPPSLGVRILATYQNLMSRAHEVPEGQLLFIREREELYIRVHNGFRKILMEE
KISIPGSGLDNEVYERSSSIHYSHGGTASSGSHRPFQPHLPVHARPEYSAYSTAKPWRGD
ESVVDPHHLPEQPAVHPPRQGAQQESLDHFFPNNRQTETAPLAVHTHHDFQPALHLIALN
SPQSGSMRGIRGADFQCFQQARQVGLSGTFRAFLSSRLQDLYSIVRRADRSTVPIVNLRD
EVLFNNWENLFSGSEAPFRTGVRILSFDGRDVLRDSAWPQKYVWHGSDSKGRRLTESYCE
TWRTDDTVVTGQASSLASSKLLEQKSNSCRNAFIVLCIENSFMTSSKK
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagtaatagtcagtgcttggcttctgctgatgctcctctgctgcttagccaat
gcccagggctggaggaattggttttggagtggttcagaagaaaccacgctgtctcccaca
aaagctgccgaggctgaagatgagacaagccaggacctttccacacctgcagctaccgcc
agcccaaatgccccctttgaaactactactgatcctgagcccagggggaaagcggggacc
atatttaccctgaagcaaccagactttactccaaccgtgccagtccctgcagcaacatct
ccttcccaggaagaaggcagagaaagaaatattacaggagtgggagtggagatcctcagt
gtggctgaaggcattcagaatttggttcagcttttggatgaaaagacaaccgacaggatg
gagaggaccgaggtacctgccacaactgagaccagcgcatcacctgcccccgttacggaa
ccagggagtatccagaacgttacctctaacttaacaggcgacatacagacctctctgaaa
acgaagaagccagagggggcaacgaagcttgctcgtctgtggaacaaagacttggctctt
ctgtggaacaagacgcgcgtcttcccgaagaaacctgggaaaccacggcaagaaaatttc
agcagagaagttggtctcttagagttgattggagatcctccgccagaccagataaccaaa
atctatggcccagacaaaagtcctgcttatgtgtttagtccggatgccaatgcaggacaa
gtggcacggtaccacctcccaagccccttttacagagacttctcactcttgttctacatt
caatccacttcggacaatgcaggggtgctttttgctcttacggatgcctcccagtcaatc
atctacgtcggtgtgaagctttctgaggtgaaagatggaaaacagcagatcattttctac
tatacagagcccggctctcaaaattccaacgttgcagccacatttaccgtcccttccctg
gtcaatctgtggactcgctttgccctcagcgtgcgggattacaatgtggtgctttatatg
gactgtgaagaatttaagatggttcatctagagaggtcatccggtaagatagagctggaa
gaaggagcaggactatttgtgggacaagctggaggtgcagatcctgataaataccagggt
atcattgtagaattaaaaataaaagataatccttgggctgctggttaccagtgtgtcgaa
gaagatgatgactgtgatacgtgtggtggtagtggaagtggattagacataaagcaacca
ccttccgaaaaggaaagcgtgattcctctgttgtcaaaacttccagtgcccccacctgtt
acttcccctgccattgccaaaaaacctgtgcagttagaggagactgaatatactgagagg
ccaacatatgttcctgcaagtggaaccaaaggtgaaaaaggagatcctggagagaaaggg
gaccgtggccccaaaggagatcctgggactggggttttgtcaaccaatggtgataaagga
gaaaagggagaaaagggggagctgggtataaagggaagtgcaggctttggctatccaggc
tctaaaggacagaaaggtgagcctggtactacagggcttccaggtccaattgggccccca
ggacctcctggaaccatcatgaggcactccgatggctctactgttgagggaccaggagcc
atgggcccaccaggacttcctggaaaagatggtcaacctggaaaggatggagagcctggg
gaccctggtgaagatggtaaaccaggtgatgttggtccccaaggattccctggcactccg
ggtgagcctggcctgaaaggcgaaaagggagaaccaagtgttggtgcgagaggtcctcct
ggccccccaggcctacctgggaaacctggattgagttccaaagtggataagttgacattt
attgatatggagggctctggttttggaagtgagttggagtctttgcgaggtcccagaggg
ccacctgggcctccaggccctcctggtgtacctggtttaccaggacaacctggaagattt
gggacaaatggcactgactttccaggcctcccaggcctccctggagttccaggaagaaat
ggcaactcaggaatcccaggacctccgggcccacttgggcctccaggaaaagatggcatc
cctggtcaacctggagaaaaaggagcaccgggagaaccaggtgaaatgggctttccagga
gcacctggaccagagggcaaccaaggagtgccaggatttccaggaacaccaggtgaacct
ggtctcgcaggcctacctgggccaatgggaccccgtggattgcctgggccccctgggccg
ggcattgcagcagaatttgtcgacatggagggctcaggattcccattagtttctggtggt
cctggaactcgtgggccagaaggtcctccggggcttccaggactcccaggacttccaggt
cctccaggacccaagggagatgagggcatcattggtctcccgggcttgccaggcgaaaag
ggatatcctggcttgccaggattagatggtcgccctggattagaaggtttcccaggacca
caaggacaaaagggtgaagaaggaagcccagggtctaaaggtgaaaaaggtcaagatgga
ataggacttcctggccctcctggtcctccaggacaagccgtgtacctgtctagtgaagat
aaaactgtgcctgttttgccaggcctagagggaccaaagggaccaaaaggtgactcagga
actccaggtttacaaggctatcctggactaaagggtgaaaaaggagagccaggagttgta
actaggcctgatggaacaatccttgcagctgaagcaaaaggagaaaagggtgaaccaggc
ccaagtggacctatgggacctggagggccacctgggcgatatggacggaagggagaactt
ggctttcctggaagacctggccggcctggtatgaacggattgaaaggagaaaaaggtgac
ccagcagacttaagcggagcgctgggcttaaggggtcctcctggccccccagggcctcca
ggccccccaggcagtcctgtacctgtttacgagaataatgcatttagtgacttgggccct
ccaggacctccaggattgcctggctaccatggtcagaagggagaaaaaggtgaacagggt
cttccagggccaccaggccagttcccttatgacctcagcagattcagctccaccttcagg
ggagaaagaggggacaaaggtgatcctggaatgaaaggcgaaaaaggtgaatcaggtggt
ggatcaaatgctgctggacttcctggtccccaagggtatcctggtcttccgggccccaaa
ggtgagagcatcagaggcctgcctggccctccaggccctcaaggacctccaggggcaagt
tttgaaggacatccagggccgcaaggccctcctggccctcctggcccaccaggaccacct
tctttcccaggtccccacaggcaacatatcagtattccaggacccccaggtcctccagga
cccccaggacctccaggcattagtgacccaccttctttgggggtacggattttagcaacc
taccagaacctgatgagcagagctcatgaggtgcctgaagggcagctccttttcatccga
gagagagaagagctctacatccgtgtccacaatggcttcagaaaaatccttatggaggaa
aaaatatccattcctggctctggactggacaatgaagtctatgaaaggtcttccagtatc
cactattctcatggagggacagcctcctctggatcccatcgtccatttcagccacactta
ccagtgcatgcacgtccggaatatagtgcttattctactgccaagccttggagaggggat
gagagtgtcgtcgacccacaccaccttcctgagcaacctgccgtccacccacctcgtcag
ggagcacagcaagaatccttggaccatttctttcccaacaaccgccagactgagactgct
cctttggcagttcacacacatcatgacttccagcctgctctgcatcttatagccctgaat
agtccccagagtggcagcatgcgaggcatccgaggagctgatttccagtgtttccagcaa
gctcggcaagttggactgtctggcactttccgagcattcctctcctctcggctgcaagac
ctgtacagcatagtgcgcagagcagacaggagcacggtgccaattgtcaatctcagggat
gaagtgttgtttaataactgggagaacctcttctcaggctctgaagctccattcagaact
ggggttcgcatcctctcctttgatggaagggatgtcctgagagactctgcatggcctcag
aagtatgtgtggcacggctccgattccaagggacggcggctaacagagagctactgcgag
acatggcggacggatgacaccgtggtgactggccaggcttcctcgctggcatcaagcaag
ctgcttgaacagaagagcaacagctgcagaaatgcctttattgtcctgtgcatcgaaaac
agcttcatgacatcttccaagaaatag
DBGET
integrated database retrieval system
