Pituophis catenifer annectens (San Diego gophersnake): 139308261
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Entry
139308261 CDS
T11059
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03040
Spliceosome
pcae04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139308261 (PRPF19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139308261 (PRPF19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcae03041
]
139308261 (PRPF19)
04121 Ubiquitin system [BR:
pcae04121
]
139308261 (PRPF19)
03400 DNA repair and recombination proteins [BR:
pcae03400
]
139308261 (PRPF19)
Enzymes [BR:
pcae01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139308261 (PRPF19)
Spliceosome [BR:
pcae03041
]
Complex B
Other components
Prp19 complex
139308261 (PRPF19)
Complex C
Prp19-CDC5 complex
139308261 (PRPF19)
Ubiquitin system [BR:
pcae04121
]
Ubiquitin ligases (E3)
U-box type E3
139308261 (PRPF19)
DNA repair and recombination proteins [BR:
pcae03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
139308261 (PRPF19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_DCAF4
U-box
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_SPT8
eIF2A
Beta-prop_Nup120_160
Beta-prop_ACSF4
PROPPIN
RMC1_N
Cytochrom_D1
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
Beta-prop_DCAF12
zf-Nse
Beta-prop_LRRK2
Nucleoporin_N
DUF1830
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
139308261
NCBI-ProteinID:
XP_070787861
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSLICSISNEVPEHPCLSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLLDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAMPSSQPNPMGAGEPMDLGELAGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELNRYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVSGASCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQVFICKQWTEVLHFTEHSGLTTG
VAFGHHAKFLASTGMDRSLKFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcatatgctccatttctaatgaggtaccagaacatccctgtctgtccccagtc
tcaaaccatgtttatgagcgaagactgattgaaaagtatattgcagagaatgggactgat
ccagtgaacaaccagccactgtctgaggaacagctgttagatatcaaagttgcccatcca
attcggcctaagcctccttctgctaccagtattccagctatcctgaaggcactacaagat
gaatgggatgctgtcatgctacacagtttcactttgcgccagcagcttcagactacacgc
caggaactttctcacgcactctaccaacatgatgctgcttgccgtgtcattgctcgtctc
accaaagaggtgactgctgcaagagaagctttggcaactctgaaaccccaggctggcctc
attgttccccaagctatgccctcttcacaaccaaatcctatgggtgccggtgaaccaatg
gatttaggagagttggcaggaatgaccccagaaattatccagaaacttcaagacaaagcc
acagtgctgaccacagagcgtaaaaagagagggaagactgtgccagaggaattggtgaaa
ccggaagaacttaatagataccggcaggtggcttcacatgtgggattgcacagtgccagt
atccctggcatccttgctcttgacctgtgtccttctgacaccaacaagatcctcacaggt
ggagctgataaaaatgttgttgtctttgacaagagctcagaacagatcctggccaccctg
aaaggtcacacaaagaaggtcaccagcgtagtgttccacccatcccaggaactggtattc
tcagcatctccagatgctactatccggatttggtcagtctctggcgcttcctgtgtgcag
gttgtacgagcccatgaaagtgctgtcacagggctgagtcttcatgctactggcgattat
cttctgagctcttcagatgaccagtattgggctttctctgacatccagactggccgtgta
ctcaccaaagtcacagacgaaacttctggctgtgctctcacctgtgctcagtttcatcct
gatggacttatttttgggacaggaacaatggactctcagattaaaatctgggatttaaag
gaacggactaacgtcgcaaacttccctggacactctggtcccattactagcattgccttc
tccgagaatggctactacttggccactgctgctgatgactcctccgtcaaactctgggat
ctccgcaaactgaagaatttcaagaccctgcagctggacaataatttcgaggtgaagtct
ctcatttttgatcagagtggtacctatctggccctgggtggtactgatgtccaggtgttc
atctgtaagcaatggacagaagttcttcatttcacagagcacagtgggctgacaacagga
gtagccttcgggcaccatgctaaattcctggcttccacaggcatggacagaagcctgaaa
ttctacagcctgtag
DBGET
integrated database retrieval system
