Pituophis catenifer annectens (San Diego gophersnake): 139308446
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Entry
139308446 CDS
T11059
Symbol
TRIM50
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM50
KO
K12024
tripartite motif-containing protein 50/73/74
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcae04121
]
139308446 (TRIM50)
Ubiquitin system [BR:
pcae04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139308446 (TRIM50)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4_4
zf-C3HC4
TRIM_CC
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
zf-RING_2
RING_XB3-XBAT31
zf-Nse
zf-RING_6
zf-RING_10
Sina_RING
zf-RING_4
DUF2400
Trimer_CC
TRAF3_RING
DUF8618
Motif
Other DBs
NCBI-GeneID:
139308446
NCBI-ProteinID:
XP_070788075
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MARKLSIEQLEDQLICPICLDFFKEPLMLQCGHSYCKSCVVSLSGDLEKQILCPVCRKAV
DYSRSPPNVNLARIIEAIHTLGNSQDNQKSCPDHHNPLSLFCEQDQEVICGLCGTIGTHQ
QHKVMPISTVYSRMKEELSMLITDVQQQKRSLDEHVSKLMNNKTRITNESDVFKWVVRKQ
FQDLHRYIDEEKAKFLGQIERKTTRIIASIEVQVRQRADTLQKLKELENSLEKFNNEDQL
DFIQKYGSLPSRSELPYQHPAEGMYSAVCFKPDFHQEDVKMMVWKRLLRKVLPAPETLKL
DPVSAHPMLELSKENTMVKYGQFFQRRDSNPERFDYSNCILANKGFSWGKHYWEIIVGSK
SHWRLGIVKGTVNRKGKLSKSPENGVWLIGLKEGKVYEAFNTSRLVLPISARPQRIGVYL
HYEKGELTFYNADSPDELIPIYTFQAEFQGKLYPILDMCWHERGIHNNLPIIVPTPKMLQ
TEDDCTNTDEPTKL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcccggaaattaagcattgagcaacttgaggaccagttgatatgccccatttgctta
gatttcttcaaagagcccttgatgctacaatgtggacactcttactgcaagtcctgtgta
gtatctctctcaggtgacctggagaagcagattctttgcccagtatgccgaaaggctgtg
gactatagcagatcaccacccaatgtcaacttggctcgcatcattgaggccattcatacc
ctaggcaactcacaagataaccaaaagtcttgccctgaccaccacaatcccctcagcctt
ttctgtgagcaagaccaggaagtgatttgtggcctctgtggcaccattggcacccatcag
cagcataaagtcatgcccatctccactgtctacagcaggatgaaggaggaactctccatg
ttgataacagatgtgcaacagcagaaaagaagccttgatgaacatgtcagcaaattgatg
aataacaaaactcgcatcacgaatgaatctgatgtcttcaagtgggtagtcagaaagcag
ttccaggatctgcatagatatatcgatgaagagaaggccaaattcctggggcagatagaa
aggaaaacaacccgtatcattgcctctattgaggttcaggtgaggcagagagcagacacc
cttcagaagctaaaggagctggagaactccctggagaaattcaacaatgaagaccagctg
gatttcatacagaaatatggatctcttccctccaggtctgagcttccctatcagcaccca
gctgaaggcatgtacagtgcggtttgtttcaaacctgacttccaccaagaggatgtaaag
atgatggtatggaagcgtctgctccgtaaagttcttccagctccagaaacgctgaagctg
gacccagtgagtgctcaccctatgctcgagctgtccaaggagaataccatggtgaaatat
ggccagttcttccaacggcgagatagcaatcctgagcgctttgactacagcaactgtatc
ctggctaataagggcttctcctggggaaagcattactgggagattattgtgggctccaag
agtcactggcgcctgggcatcgtcaagggaacagtcaaccgcaaaggcaaactgagtaag
agtccagaaaatggggtgtggctcattggcttaaaagagggcaaagtatatgaggccttc
aataccagcagactggttttgccaatttcagcccgaccccaacgaattggggtctatctg
cactatgagaagggagaactaaccttctacaacgctgacagtccagatgagctgatacca
atctatactttccaagcagaattccaaggcaagctatatcccattttggacatgtgttgg
catgagcggggtatccataacaacttacccattatagtacctactcccaaaatgctgcag
actgaggatgactgcaccaatactgatgagcccaccaagttataa
DBGET
integrated database retrieval system
