Pituophis catenifer annectens (San Diego gophersnake): 139308616
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Entry
139308616 CDS
T11059
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139308616 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcae03400
]
139308616 (MSH6)
DNA repair and recombination proteins [BR:
pcae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139308616 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
139308616
NCBI-ProteinID:
XP_070788374
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All DBs
Position
Unknown
AA seq
1331 aa
AA seq
DB search
MSRQSSLLTFFSKPAEKNHDGGSPAKDTEDRPQVSASAPTSSQGRTPTLPADCDFSDFSP
GDLVWAKLEGYPWWPCLVYAHPTEGSLLRGRGRASRIHVQFFEDDPSRGWVSIRYIRPYK
GSSGRDTQRGGMFYSSRPEILRAMELADAAMRKDRSERLGLAVCDKPSESEEEEEEEMEQ
VSDEGDDFDTVKEVKSRNKRIARRKHSDGKAKKRKIFMDSDTDNEGSDMEFQPDEVSSDE
NSIEICDNETSESETVPEKKRSVKVLTKHSPKQIQEKARKSPQEVNLKNNLSETPSREIV
PDFMHKLASYAAPESFDFRPSINGGAVGGGGGDGNPTVWEHEKIDWLQDGKRKDSHRRRQ
NDPDYDQSTLFVPEDYLKNCTPGMRKWWELKSQNFDAVIFYKVGKFYELYHMDAVVGVNK
LGLVFMKGTWAHSGFPEMAFDRFSNILVQKGHKVVRVEQMETPEMMEARCKSLAHPTRFD
RVVRREVCRIISKGTQTYNILDGDYSETHNKYLLCVKEKTDDSAGLHRTYGVCFVDTTVG
KFFIGQFPDDRHCSRFRTLLAHYIPVQILFEKGNPSPETQKILKGLISFTIQESLTPGSQ
FWNASKTLKTLIEEGYFENKENTNSGSTLPPVIRSMTAENDSLGLTPEENSELALSALGS
CVFYLKKCIIDKELLSMANFEEYIPVDVDVVNRTRSRGVSEKTNQRMVLDGVTLANLEIL
QNATRSSIEGTLLEKMDTCCTPFGRRLLKQWLCAPLCNPSAINDRLDAVEDLLAEAAKMS
DIRDRLKKLPDLERLLSKIHSVGSSLKNQNHPDNKAILYEEARYSKKRIIDFLSALEGFN
VIIEILSILEDTVDGFKSKILKQIATVKSKNPAGCFPDLKAELERWDSAFDHNVARRTGV
VNPKTGFDSDYDQALANISEIEENLRQYLEVQRKRLGVRAVMYWGAGKNRYQMEIAETAV
PRDLPDEYIMKSSRKGYKRYWTKEIENMLNDIINAEERRDAAQKDCMKRLFYDFDKTRKD
WQAAVECIAVLDVLLCLAHYSQGCDGPLCRPEILLPENTSPFLELKSSRHPCITKTFFGD
DFIPNDIVIGLEDEKTNSRATCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCFVPAESCRL
TPVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAI
ASAVVKELSENIKCRTMFSTHYHSLVEDYSHSLSVRLGHMACMVENECEDPSQETITFLY
KFVKGACPKSYGFNAARLADIPEEVIQKGHKKAKEFEKSVLSMKVFRNLCWIAEGALAAR
DYLDKLTLLHV
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccagagcagcctcctcacgtttttctcaaagcctgcggagaagaatcatgac
ggcggcagccccgcaaaagacaccgaggaccgcccccaggtttcggccagtgcccctact
agcagccagggcaggacgccaacgctgccggcggattgtgacttcagtgacttttcacct
ggtgatttagtttgggccaaacttgaaggctacccatggtggccatgccttgtgtatgca
cacccaacagaaggatcccttttaagggggagaggaagagcatcacgtatccatgtacag
ttttttgaggatgacccttcaaggggctgggttagcattagatacataagaccatataaa
ggttcttcaggcagagacacccaaaggggaggtatgttttacagttcaagacctgaaatt
ttaagagcaatggaactggcagatgctgctatgagaaaggatagaagtgaacgactaggt
ctagctgtgtgtgacaaaccttcagaaagtgaagaagaagaggaagaagaaatggagcag
gtgagtgatgaaggcgatgatttcgacacagtaaaggaagtaaaaagtagaaataaaagg
atagctagacgaaagcattctgatggaaaagccaaaaagagaaagattttcatggattca
gatacagataatgagggttccgatatggaatttcagccggatgaagttagcagtgatgaa
aatagtattgaaatatgtgacaatgaaacttctgaatctgaaactgtccctgaaaagaag
cgttccgttaaagtactcactaaacattctcctaaacaaatacaggaaaaggcacgtaaa
tccccccaagaagttaatcttaaaaacaacctctctgaaacacctagtagggaaatcgtt
cctgatttcatgcataaactagcatcttatgcagctcctgaaagttttgattttcgacca
agcattaatggaggagcagtcggagggggaggaggagatggtaatccaaccgtatgggag
catgaaaaaatagattggcttcaggatggtaaaaggaaggatagtcatagaagacgacaa
aatgatccagattatgaccaaagtactttatttgtgccagaggattatcttaaaaactgc
actccaggaatgcggaaatggtgggagttgaagagtcaaaattttgatgctgtgattttt
tataaggttggaaagttttatgaattatatcatatggatgctgttgttggtgtaaataag
cttggattggtatttatgaaaggcacttgggctcactcaggttttccagaaatggcattt
gatagattctccaatatcctagtccaaaaaggtcataaagttgtacgagttgagcagatg
gagactcccgagatgatggaagcacggtgtaaatctttggctcatccaacaagatttgac
agagttgtgcgccgagaagtatgcaggataatttccaaaggaacacagacctataatatt
cttgatggtgactactcagagacccacaacaaataccttctttgtgtaaaagaaaaaaca
gatgattctgctggcctgcatcgtacatatggagtttgctttgttgatacaacagttgga
aagttttttattggccagtttccggatgatcgtcattgttctaggtttagaacactcctg
gctcattatattcctgtacagatactttttgagaaaggaaatccctctccagaaacacaa
aagatacttaaaggcttaatctcttttactattcaagaaagcttgactcctggttctcag
ttctggaatgcatctaaaactttaaaaactctcattgaagaaggttattttgagaacaaa
gagaatacaaatagtggaagcactctgcccccagtaatcagatccatgactgcagaaaat
gattcactgggacttactcctgaagaaaacagtgaacttgctctctctgctctaggcagt
tgtgtattctatcttaaaaaatgtattattgacaaggaacttctatcaatggcaaatttt
gaagaatacattcctgtagatgttgatgtagttaacagaaccagatcaaggggtgtgtct
gagaaaacaaaccagcgaatggtactagatggggtaacactggcaaacctggaaatactg
cagaatgcaaccaggagttcaatagagggcacgttattggaaaaaatggatacttgttgt
acgccttttggaagaagactactgaagcaatggctctgtgcaccattatgtaatcctagt
gccattaatgatcgcctggatgcagttgaagatctcctagctgaggctgctaaaatgtct
gatatccgtgatcgtctcaaaaaactcccagatcttgaaaggcttttgagcaaaattcac
agtgttggatcttctcttaagaaccagaaccatccagacaataaggctattttatatgag
gaggctaggtacagcaagaaaagaattatagattttttgtctgcactggaaggatttaac
gtaataattgaaattctctcaattttggaagatactgttgatggctttaagtctaaaata
ctaaaacaaatagcaacagtgaaatcaaaaaatccggcaggctgcttcccagacttgaaa
gcagaacttgaaagatgggattctgcctttgatcataatgtagcacggaggacaggtgtg
gttaatccaaaaactggttttgattccgattatgatcaagctttagcaaatatcagtgaa
attgaggaaaatcttcgtcagtatttggaagtacaacgcaaaagacttggtgtcagagct
gtgatgtattggggagcgggcaaaaaccgttaccaaatggagattgcagaaactgctgtg
cctcgggatttgcctgatgaatatatcatgaagtccagtagaaagggctataaacgttac
tggacaaaagagatagagaatatgttaaatgatattatcaatgctgaagaacggagagat
gcagcacaaaaagattgtatgaaaagattattttatgacttcgataaaaccagaaaagat
tggcaagctgcggtggaatgcattgctgttctagatgttttgttatgtcttgcacactat
agtcagggatgtgatggaccattgtgccgcccagaaatcttgttgccagagaacacttca
ccttttctggagctcaaaagttcacgtcatccatgcattacaaaaacattctttggagat
gatttcatccctaatgatattgtaataggcttagaggatgaaaaaacaaacagcagagct
acttgtgtccttgtgactggtccaaacatgggaggaaaatctacgctcatgagacaggct
ggtctcttggtaataatggctcagttgggatgctttgtacctgctgaatcttgcaggctt
actcctgttgatagagtgttcactagactaggagcttcagatagaattatgtcaggagag
agtacgttctttgttgagcttagtgagacttcgagtatactgcaacatgcaacagagcat
tcccttgttcttatggacgagctagggagaggaacagcgacttttgatggaactgctatt
gctagtgctgttgtcaaagaactttcagagaatattaagtgccgtacaatgttttcaaca
cattaccattctttagtagaagattattctcacagtctctctgtacgattgggacacatg
gcttgtatggttgaaaatgagtgtgaagatcctagtcaagaaacaatcacattcctttat
aaatttgttaagggggcttgccctaaaagttatggatttaatgctgcaaggcttgctgac
attccagaagaagtgattcagaaaggccacaaaaaggcaaaagagtttgaaaaatctgtt
ctttcaatgaaagtatttaggaatctttgttggatagctgaaggagcattagcagccaga
gactatcttgacaaactaactctgcttcacgtttga
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