Pituophis catenifer annectens (San Diego gophersnake): 139308827
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Entry
139308827 CDS
T11059
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139308827 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139308827 (HBS1L)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139308827 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
139308827
NCBI-ProteinID:
XP_070788801
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSKRDKTSVSAEPLEEHDY
EDSEHSNFISSHQLTGLEKAQLNSCLGHMKEVLGDSVPEKMLVEAVLSKNFDIQQALDSI
LAQDNKQNGKTKNEDNIIVGKPTKGKVRDSQAIRTDSDIVPKVTKMTVSGKKQATGFEVR
CANVEENGHNTFMPQKGFSAGDTIANMGIAEIQPKSTFPSQTIQVSEDSSVVPTPVKKSG
KSKQQLDIKAELEKRQGGKHLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQES
KKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKIITLMDAPGHKDFIPNMITGA
AQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQ
EIVNKLGQFLKQAGFKESDVAYIPTSGLGGENLVTKSQTSELAKWYTGKCLLEQIDSFKP
PQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQVGERLLVMPPNETCTVKGIALHEQ
PVDWAAAGDHISLTLTGMDIIKINVGCIFCCPKEPIKTCTRFRARVLIFNIEIPITKGFP
VLLHFQTVSEPATIRKLLSVLHKSTGEVAKKKPKCLTKGQNALIELQTQRPIALELYKDF
KELGRFMLRYGGSTIAAGVVVEIKE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcacagaaacgtccgtggctacaactacgacgaagattttgaagatgatgac
ctttatgggcagtctgtagaagatgattactgcatctcaccatcaacagctgctcagttt
atttattcaaaacgagataaaacttcagtctctgcagaacctttagaggaacatgattat
gaagactctgaacatagcaattttatctccagtcaccagctgactggacttgaaaaagct
cagctaaattcatgccttggtcatatgaaagaagttcttggagattcagtgccagaaaaa
atgctggtggaagcagtactcagcaaaaactttgatatacagcaagctttggactctatc
cttgcacaagacaataagcaaaatgggaagaccaagaatgaggataatataattgtagga
aaaccaactaaaggaaaagtgagagattctcaagctatcagaacagattctgacattgtg
ccaaaggttaccaaaatgaccgtatctggaaagaagcaagctactggctttgaagtccga
tgtgcaaatgtagaagagaatggacataatacctttatgccacaaaaaggattctctgct
ggagataccattgcaaatatggggatagctgagatacaacctaaatcaacttttccctcc
cagaccattcaagtatcagaagactcatcagtagtaccaactcctgtgaaaaagtctgga
aaatccaaacaacaattagatataaaagctgagttggagaagagacaaggaggaaaacat
ttgcttaaccttgtagtaataggacatgttgatgcaggaaaaagtactttaatgggtcat
ttgttgtatcttctgggtaatgtgaacaagcgaacaatgcacaaatacgagcaagagtca
aagaaagctggaaaagcatcatttgcttatgcatgggttttagatgaaacaggggaagag
agagaaaggggagtgacaatggatgtaggtatgaccaaatttgagacaaaaacaaaaatt
attacactaatggatgctcctggccataaagacttcattccaaatatgatcacaggagct
gcccaggctgatgtggctgtgttagtggtggatgccagcagaggggaatttgaagctggt
tttgagactggtggacagacacgagaacatggtcttttagttcgatcattgggagtaaca
cagctagcagttgcagtcaataaaatggatcaggtcaattggcaacaagaacgatttcag
gaaattgttaataaacttggacaattccttaagcaagccggctttaaggaatcagatgta
gcttacatccctaccagtggacttggcggcgaaaatcttgttacaaaaagtcaaacaagt
gaattggcaaaatggtacacaggaaaatgtttgctggaacaaattgattctttcaagcca
cctcaaagatcagttgataaaccattcagattatgtgtatcagatgtttttaaagatcaa
ggatcaggattctgtgtgacaggtaaaatcgaagcaggatatgtccaagttggggaacga
ctccttgtcatgcctcctaatgaaacttgcactgtaaaaggaattgctctacatgagcag
ccagtggattgggctgcagctggagatcacattagtctcactttgactggcatggatatc
atcaaaatcaatgttggttgtatattttgctgtcccaaggagccaattaaaacctgcaca
cgcttcagagctcgtgttcttatctttaatattgaaatacccatcaccaaaggatttcct
gtgctcttacattttcaaactgtcagtgagcctgctactattagaaaattgctgagtgtg
cttcataagagtactggtgaagttgccaagaaaaaacctaagtgtctgacaaaagggcag
aatgctttaatagaactacagacccaaaggcctattgctttggagctttataaagacttt
aaagaacttgggagatttatgttgcgctatggaggatccactatagcagcaggagtagtt
gtggagattaaggagtga
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