Pituophis catenifer annectens (San Diego gophersnake): 139309128
Help
Entry
139309128 CDS
T11059
Symbol
SF3B1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139309128 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcae03041
]
139309128 (SF3B1)
03036 Chromosome and associated proteins [BR:
pcae03036
]
139309128 (SF3B1)
Spliceosome [BR:
pcae03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139309128 (SF3B1)
Complex B
139309128 (SF3B1)
Complex C
U2 SnRNP specific factors
139309128 (SF3B1)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139309128 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
139309128
NCBI-ProteinID:
XP_070789385
LinkDB
All DBs
Position
Unknown
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagacattgaagcccagattcgagaaattcaaggc
aaaaaagctgcgcttgatgaagctcaaggagttggccttgattctacagggtattacgat
caagagatctatggtggaagtgatagcaggtttgctggatatgtaacttcaattgcagca
actgaacttgaagatgatgatgacgactattcttctacaagtttgcttggccagaagaag
cctgggtatcatgcaccggtggcattacttaatgacataccacaatcaactgaacagtat
gatccatttgctgaacatcgtccacaaaagattgccgacagagaagatgaatacaaaaat
cggagacggatgatgattatttcccccgaacgtcttgatccctttgcagatggtgggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacaacattta
acaaaagaagagagagaaattagacagcaactagcagaaaaggctaaagctggtgaactt
aaagtcgtcaatggtgctgcatcccagccaccatcaaaacgcaaacggcgttgggaccag
actgctgaccagactcctggtgccacacctaagaaattgtctagctgggatcaagctgag
acacctggacatactccatcactgcgctgggatgaaacacctggtcgtgcaaagggtagt
gagacacctggagcaacccctggatctaaaatatgggatccaactcctagtcatacacca
gcaggagctgcaacacctgggcgtggtgatacacctggtcatgcaacacctgggcatgga
ggtgcaacttccagtgctcggaagaatcgatgggatgagactccaaaaacagaaagagat
accccaggacatgggagtggatgggcagaaactcctcgtactgatcgagggggtgattcc
attggtgaaacgccaactcctggagcgagtaaaagaaaatcacgttgggatgagacaccg
gcaagtcagatgggtggcagcacccctgtattaacaccaggcaaaacaccaattggtaca
ccagctatgaacatggcaacacctacaccagggcacataatgagcatgactcctgaacaa
ctccaagcctggcgatgggaaagagaaattgatgaaagaaatagacccctttctgatgaa
gagttggatgccatgtttcctgagggctatcgggttctccctcccccagcaggttatgtt
cctattcgtactccagctcgtaaacttacagcaacaccaacccccttgggtggcatgact
ggattccacatgcaaacagaagacaggactatgaagagtgtcaatgaccagccctcagga
aatcttcctttcctaaaaccagatgacatacaatattttgataaactgctggttgatgtt
gatgaatcaactcttagtccagaggaacagaaagaaagaaaaataatgaaactgcttttg
aagataaaaaatggcacccctccaatgaggaaggctgctttgcgacagattactgacaaa
gctcgagaatttggagctggcccattgttcaatcaaattttgccccttctgatgtctcca
acccttgaagatcaagaacgccacttgcttgttaaagttattgacagaatcttatataag
ttggatgacttagtccggccatatgtacacaagattcttgtggtcattgaacctttgctg
attgatgaagattactatgctagagtggaaggcagagaaatcatttccaacctggctaag
gcagctgggctggcaacaatgatctctaccatgcgacctgatattgataacatggatgaa
tatgttcgtaacacaacagctcgagcttttgctgttgttgcttctgccctaggaattcca
tccttgttgccatttttaaaagctgtgtgcaaaagcaagaagtcttggcaagccagacac
acgggcatcaagattgtgcagcaaattgctattctgatgggttgtgcaattttaccccat
ctcaggagtttggttgaaattattgaacatggcttggttgatgagcaacagaaagtacgc
accattagtgctttagccattgctgctttagctgaagcagcaaccccatatggtattgaa
tcatttgactctgttctaaagcccctttggaaaggcatacgtcaacacagaggaaagggt
ctggctgctttcttgaaagccataggatatcttattccacttatggatgcagagtatgcc
aactactataccagagaagtaatgctcattcttatcagagagtttcagtctcctgatgaa
gaaatgaagaagattgtgttgaaggttgtaaagcagtgttgtggcacagatggtgttgaa
gcaaactacattaaaacagaaattttgcctccatttttcaagcatttctggcagcataga
atggcattggatagaagaaattatagacagttggttgacacaaccgtggagcttgcaaac
aaagttggagctgcagaaattatttccaggattgtggatgatctgaaagatgaagctgag
caatataggaaaatggttatggaaactattgaaaagatcatggggaatctgggtgcagct
gacattgaccacaagttggaagaacaacttattgatggcattttatatgccttccaagaa
cagactacagaggactcggtgatgttgaatggctttggtacagtggtaaatgctcttggc
aagcgagtgaaaccatatttaccccagatctgtggtacagtgttgtggcgtttgaacaac
aaatcagccaaagtgagacagcaagctgccgacctgatatctcgtactgcagttgtcatg
aaaacctgtcaagaggaaaaattgatgggtcacttgggtgtggtattgtatgagtatttg
ggtgaagaataccctgaagtattgggcagtatcctaggagctcttaaagccattgtgaac
gtcataggtatgcacaaaatgactcctccaattaaggatctgctgccaagactcacacct
atcttgaaaaacaggcatgaaaaagtacaagagaattgtattgacttggttggacgtatt
gcagacagaggggcagaatatgtttctgcaagggaatggatgaggatttgttttgaattg
cttgaattgttaaaagcacataagaaagctattagaagagctactgtgaatacatttggt
tatattgcaaaagctattgggccccatgatgtgcttgcaaccctgctaaataatttgaaa
gtacaagaaagacaaaacagagtgtgtacaacagtggcaattgctattgtggctgaaact
tgttccccttttacagtactgcctgcacttatgaatgaatacagagttccagagttgaat
gttcagaatggtgtattaaaatctctttctttcctatttgaatatattggagaaatggga
aaagactacatttatgctgttacccccttacttgaagatgctttaatggacagggatctg
gtgcacaggcaaacagctagtgcagtagtgcagcatatgtctcttggagtatatgggttt
ggctgtgaggactctctgaatcacttgctaaattatgtgtggcccaatgtgtttgagaca
tctcctcatgtcatccaagcagttatgggagcactggagggcctaagggtggctattgga
ccttgccggatgttgcagtattgtttacagggtttgtttcaccctgccagaaaagtcaga
gatgtgtattggaagatttataattccatctatattggttcacaggatgctctaatagca
cattatccacgaatctacaatgatgaaaagaatacctacattcgttatgaacttgattat
gtcttgtaa
DBGET
integrated database retrieval system
