Pituophis catenifer annectens (San Diego gophersnake): 139309337
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Entry
139309337 CDS
T11059
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139309337 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139309337 (SKIC2)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139309337 (SKIC2)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139309337 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
139309337 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
139309337
NCBI-ProteinID:
XP_070789496
LinkDB
All DBs
Position
Unknown
AA seq
1274 aa
AA seq
DB search
MDLERIVLPPRGPLELPLSILEVGCAGRFELITQEEPTKEGFPLTTLPHGLPPYAEDLAS
ELEQHYLNSPEWLPIHDFERSHRFWPREKDVQSLFALEVTPVHSTLQAERNPTTGELLGF
KEALVDNTGLSAKNSLSFQRAPGPPSESLRGSATNYPFWPGGIDEPSLELIKAQEDKEED
IDFEKDLLTVPPGWKKGVEFTKQEIMASPGLLNLTNLLGALDTFELEASSDEEGKEKAEE
VEKRRKKGKNKGAREEEIPPAEPAPLHRVNSLEELVLKEVTPIPESAPQAAPASAPAAVP
PKEQWAILVDVSSPVDDFYKLIPDPAFQWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGK
TVVAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIM
TTEILRSMLYNGSDVLRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVP
NTLEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGY
YDAVDAKKDRTSKHSQTFGAKQPMHAGAGPGQDKNIWLSLIDMLRKKDQLPVVAFTFSRN
RCDENASMLTTIDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLHMVDLLKRGIGVHHS
GILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFNSVRKHDGANFRDLVPAEY
IQMAGRAGRRGLDTTGMVIILCKNQVPEMSDLHRMMLGKPTRLQSQFRLTYTMILNLLRV
EALRVEDMMRRSFSEFHTRKDSKVYEHRIAQLSSMLANMEVPDTSRQLGDLQEYYSVVRE
LREIREHIQRRVMESMNGLKALSVGRVIVVSNQEHKNALGVILQVSSDAANRIFSTLVMC
EKNSMERDLVEGQELNRPPSAEVPLPEDLLHTKLFLPEGPCGHTIKKLGPADILGITTKT
LRVNAERILEDFRKRQMPRFRNDPPGPSAATATQELLRLAEGSPEGLPLLDPVNDLQLKD
LEVVESIIRARGLEERLPEFQCVHSPLFHIEFVRFRERQRVLDELDQLRFLLSDQSLLLL
PEYHQRVEVLRSLGYINEGGAVELKGSVARQISNHELLLTQLLLDNALTDLRPEEIVALL
SCTVCQVRTQVEPQLPSVLQKGIEHIRSVAEQIALLQRKCGLQESIEDFVEQYKFGLVEV
VYEWARGMPFAEIARLTDVQEGIIVRCIQRLDETCREMRNAARVTGEPTLHAKMEAASNM
IKRDIVFAASLYTQ
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggatctggagaggatagtcctccctccccggggacctttagagttgcctctttccatt
ttggaggttggatgtgctggtcgttttgagctcatcacccaagaggaacccaccaaagag
ggatttccactgaccacactgccacatggtctgcccccatatgctgaagatctggcctcg
gaattggagcagcattatctcaacagcccggaatggcttcccatccatgactttgaaagg
tctcacaggttctggccccgagagaaggatgtccaatcactcttcgcactggaggtcaca
cctgtgcactccaccctccaggctgaacgcaatcccaccaccggggagctgctgggtttt
aaagaggcacttgtggacaacacgggattatcagccaagaattcgctttccttccagcga
gcgcctggccctccctccgagtctctgagaggcagtgccaccaactaccccttctggcca
ggtggaattgatgagccaagcttggaactgattaaggctcaggaagataaggaagaggac
attgattttgagaaagatttgctgacagtgccacctggatggaaaaaaggggtggaattc
accaaacaagagatcatggcctccccaggattgctgaatttgaccaatttgctgggtgca
ctagacaccttcgagctggaggcctccagtgatgaggaaggcaaagagaaggcagaggaa
gtggagaagaggaggaagaaagggaagaataagggagcaagggaagaagagatccctcca
gcagaaccagcaccactgcacagagtgaacagcttggaggaactggtgcttaaggaggtg
acacccatccccgaatcagccccacaggctgcccctgcctctgcccccgctgcagtgccc
cctaaagaacagtgggctatcctggtcgatgtaagctcccccgtggatgatttctacaag
ctaattcctgatccagccttccagtggccttttgagcccgacgttttccagaaacaggca
attctccacttggagaagcatgattcagtctttgtcgccgcccacacctctgcgggaaag
actgtcgtggctgagtacgccattgctctgtcgcagaagcacatgacacgcaccatctac
acatccccaatcaaagcgctttccaaccagaagtttcgggatttcaagaacacctttggg
gatgttggcttgttgacaggagatgtgcagctgcatccggatgcctcctgcctcatcatg
acaactgagattctcaggtctatgctctataatggctccgatgtcctcagagacctagag
tgggtgatctttgatgaagtgcattatattaatgattctgagcgcggtgtggtttgggaa
gaggtcctcatcatgttgccagaccacgtaaacataattttgctgagtgccaccgtcccc
aacaccctggagtttgctgactggattgggagaatcaagcggaagaagatttatgtgatc
agcacactgaagcgccctgttccactggagcattatctgtacacgggaaacagccagaag
acgcagaacgagctcttcctcctcgtggacgcccgtgggacgttccttacaaaggggtat
tatgatgctgtagatgccaaaaaggaccgaactagcaaacactcccagacctttggggcc
aaacagccaatgcatgcaggagctgggccaggccaggacaagaacatctggctctccctc
attgacatgctgcgcaagaaggaccagctgccggtggtggccttcacgttctctcgcaac
cgctgcgacgaaaacgcctccatgctgaccaccatcgacctgaccaccacgacggagaaa
agcgagatccacgtcttcttccagaagtgcatctcccgactgaagggtaccgatcggcag
ctgcctcaggttcttcacatggtcgaccttttgaaacgtgggattggggtgcaccacagt
ggcattctgcccatcctcaaggaggttgtggagatgcttttcagcaaaggccttgtcaag
atcctcttcgccacagagactttcgccatgggggtgaacatgccagcaaggactgtggtt
ttcaattcagttcgtaaacatgacggtgctaatttccgggacttggtaccagccgaatac
atccagatggcaggccgggctggacgtcgaggtctcgacacaactgggatggtgattatt
ctgtgcaaaaaccaagtgcctgaaatgtccgaccttcaccgcatgatgttgggcaagcct
actcggttgcagtcccaattccgcctgacgtacaccatgatcctaaacctgttgagagtg
gaggcactccgcgtggaagacatgatgaggagaagcttctccgagttccacacccggaaa
gacagcaaggtctatgaacacagaatcgcccagctgagcagtatgttagccaacatggaa
gtgccagacacgtcaaggcagcttggtgacttacaggagtattattctgtagtcagagaa
ctgcgagagatacgggagcacattcagagacgagtaatggaatcaatgaacggattgaaa
gccctttctgtgggacgagtgattgtggtgagcaaccaagagcacaagaatgccctggga
gtcatcttgcaggtttcttcagacgcagccaatcggatcttcagcactttagtgatgtgt
gagaagaactccatggaacgggacctggttgaaggccaggagttgaatcgtcctccatct
gctgaggtgcctctgcccgaggatcttctccacacgaagctcttccttcctgaaggcccc
tgtggacacaccataaagaaactgggccccgcagatattctgggcatcacaacgaaaacc
ctccgtgttaatgccgagcgtatcctggaggatttcaggaaacgacaaatgcccaggttc
aggaacgacccacctggaccgtcagcagccacagcaacccaggagctgctgcgtttagcc
gagggctctccggaaggccttccccttctggatccagtgaacgaccttcagctgaaggat
ctggaagtcgtagagagcataatccgggcccgcggtctggaggaacgtttgccagagttc
cagtgtgtccacagcccactctttcacatagagtttgtacgcttccgagagcgccagcgg
gtgttggacgaactggaccagctgcgcttcctgctgtcggaccagtctcttctcttactg
cctgagtatcaccagcgcgtcgaagtcttgcgttccctgggctacatcaacgaaggagga
gccgtggagctcaaggggagcgtggcccgtcagatcagcaaccatgagctgctcctgaca
cagctgcttctggacaatgctctgactgacctgcggcccgaggagatcgtggccttgctg
agctgcacggtgtgccaggtccgcacccaggtggagcctcagctgccctctgtccttcag
aagggcatagagcacatccgctcggtagccgaacagatcgccctgctgcagcgcaagtgc
ggcctgcaagaatcgatcgaggattttgtggagcagtacaaatttgggctggtggaagtg
gtttacgaatgggcccgtggcatgccctttgccgagatcgcccgcctgaccgacgtgcag
gaaggcattatcgtccgctgcattcagcgcctggatgaaacctgtcgcgagatgcgcaac
gctgcccgggtgacgggggagccgaccctgcacgccaagatggaagcggcctccaacatg
atcaagagagacattgtctttgccgctagcctctacacccagtga
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integrated database retrieval system
