KEGG   Pituophis catenifer annectens (San Diego gophersnake): 139312074
Entry
139312074         CDS       T11059                                 
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2
  KO
K10140  DNA damage-binding protein 2
Organism
pcae  Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03420  Nucleotide excision repair
pcae04115  p53 signaling pathway
pcae04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pcae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    139312074 (DDB2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    139312074 (DDB2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    139312074 (DDB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pcae04121]
    139312074 (DDB2)
   03400 DNA repair and recombination proteins [BR:pcae03400]
    139312074 (DDB2)
Ubiquitin system [BR:pcae04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     139312074 (DDB2)
DNA repair and recombination proteins [BR:pcae03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      139312074 (DDB2)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_WDR5 Beta-prop_EML_2 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin WDR55 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 NBCH_WD40 Beta-prop_NUP159_NUP214 DUF6566
Other DBs
NCBI-GeneID: 139312074
NCBI-ProteinID: XP_070792701
LinkDB
Position
Unknown
AA seq 509 aa
MGSRKQSKDEHLNPHEHQSEKVSKSSGKRMRDHAEPDNELQAKKIFVRKTKQLQETGQAC
FGGSMFRNSRVAFHPWEMQKNIVHYVYQTMVGGTIGAQLKKCLQVPFVRSLYLYRLFRTA
SPFDRRITVLEWHPMHPSTVAVGSKGGDIILWNYEVLNKTCFIKGIGAGGAITGMKFNPF
NPNELYTSSIAGTTALQDFNGNTIRVMANTNDWDFWYCSVDVSATSRTVVTGDNVGKVIL
LSTEGEKIWNLKLHKKKVTHVEFNSHCDWLLATASVDQTVKIWDLRNIKDKSSCLHVLQH
DKGVNAAYFSPTDGAKLLSTDQHNEIRVYSSSDWSKPQHSISHPHRQFQHLTSIKATWHP
RYDLIAVGRYPDPKFPGYTADELRTVDIFDGNSGEMLCQLQDPKASGIISLNKFNPMGDT
LASGMGFNILIWDRKVMIGKKQEDLMQAVKEQRIGLTNVPCQRGQRQRQSNTETNKFKTK
LLSLELEDTKTKGKEYTVYTKRRKDPEDL
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgggttctaggaagcagtcaaaggatgagcatctgaatccacatgagcatcaatcagaa
aaagtgtcaaaatcatctggaaaaaggatgcgagaccatgcagaaccggataatgagtta
caagcaaaaaaaatatttgtgaggaaaaccaaacaactgcaagaaacaggacaagcttgc
tttggtggttccatgtttcgaaattcaagagttgccttccatccatgggaaatgcaaaag
aatattgtccactatgtttatcaaactatggtgggtggcactattggagcacagcttaag
aagtgtctccaggtgccctttgtacggtctctctacttgtaccgtctgttccgaacggca
agtccctttgacagaagaattacagttttggaatggcatccaatgcatcccagcacagtc
gctgtgggctccaaaggaggagacatcatcctgtggaattatgaagtgctcaataaaaca
tgttttattaaagggattggagctggaggggccatcacaggaatgaaatttaatcctttt
aatccaaatgagctgtacacatcatcaattgctggaactactgccttgcaagattttaat
ggcaacacaatccgggtcatggccaataccaatgactgggatttctggtattgcagtgtt
gatgtatctgcaactagtcggactgtagtaacaggagataatgtagggaaagtgattttg
ttaagtactgaaggtgaaaagatatggaatttgaagctgcacaaaaagaaagtaactcat
gtggagtttaattctcattgtgattggctgctggctacagcctctgtagaccagacagtt
aaaatctgggatctgagaaatattaaagataaatcaagttgccttcatgtacttcagcac
gataaaggtgtcaatgcagcttatttcagcccaacagatggtgctaagctactgagtaca
gatcagcacaatgaaatccgggtttattcttcttctgattggtccaaaccacagcattca
atttcacatcctcatagacagttccagcatctcacatctatcaaggcaacatggcatcct
cgttatgatctcattgcggttggtcgttatccagaccctaagttcccagggtacacagca
gatgagctgagaactgttgacatatttgatggaaacagtggagagatgctgtgtcaacta
caagatccaaaggcatcaggcattatctctctcaataagtttaaccccatgggtgacacc
ttggcttcaggaatgggctttaatattctgatatgggaccgaaaagtgatgataggtaag
aagcaggaggatctcatgcaagctgtgaaagagcagagaattgggcttacgaacgtaccc
tgtcaaagaggacagaggcaaaggcaatcaaacacagaaacaaacaaattcaaaactaaa
ctgctcagtcttgaattagaggataccaaaacaaagggtaaagaatacacagtgtacact
aagagaagaaaggacccggaggacttatga

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