Pituophis catenifer annectens (San Diego gophersnake): 139312106
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Entry
139312106 CDS
T11059
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03013
Nucleocytoplasmic transport
pcae03015
mRNA surveillance pathway
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139312106 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
139312106 (DDX39B)
03015 mRNA surveillance pathway
139312106 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139312106 (DDX39B)
03041 Spliceosome [BR:
pcae03041
]
139312106 (DDX39B)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139312106 (DDX39B)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139312106 (DDX39B)
Spliceosome [BR:
pcae03041
]
Complex C
Other components
EJC/TREX
139312106 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139312106 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139312106
NCBI-ProteinID:
XP_070792740
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTLHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatgatgtcgacaatgagctgctggattatgaagatgatgaggtggaaaac
caagcagctggagaaggggtggatgtcccatctaagaaagacgtcaagggatcctatgtc
tccatccacagttctggcttccgtgacttcctattaaaaccagaacttttgcgtgccatt
gttgattgtggctttgagcacccttcagaagtgcaacacgagtgtatcccccaggcaatc
ttgggcatggatgtcctgtgccaggccaaatctggcatgggcaagactgctgtcttcgtt
ctcgctacacttcaacagttggaaccaataacaggacaggtttctgtgctggtgatgtgt
cacacgcgtgaactggccttccagattagtaaagaatacgaacggttctccaagtacatg
cccagtgtcaaggtggcagtgttctttgggggcctgtccatcaagaaggatgaagaggtt
ctgaagaagaactgcccccacattgtggtggggaccccgggccgcatcctggctttggcc
cgcaacaagagccttaacctcaaacatatcaagcatttcatcctggacgaatgtgacaaa
atgcttgagcagcttgatatgcgtcgagatgtccaggagatcttccgcatgaccctgcat
gaaaagcaggtcatgatgttcagtgctactctcggcaaggaaatccgcccagtgtgccgc
aaattcatgcaagaccctatggagatcttcgtggatgacgagaccaagctgacgctgcac
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctgtttgac
ctgcttgatgtgctggagttcaaccaggtggtcatctttgtgaagtccgtgcagcgttgc
atagctctggcccagctcttggtggagcagaacttcccagccattgccatccataggggc
atgccccaggaagagagattgtcacggtaccagcagttcaaggatttccagcgtcgtatc
ttggtagccaccaatctgtttggtcgtggtatggatatcgagcgggtcaacatcgctttc
aactacgatatgcccgaggattcagacacttatttgcaccgggtggctcgtgctggtcgc
tttggcacaaagggcctggcaatcactttcgtatcagatgagaacgatgctaagatccta
aatgaagtgcaggatcgcttcgaagtgaacatcagtgaactgcctgacgaaatcgatatc
tcttcctacattgaacagacccgataa
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integrated database retrieval system
