Pituophis catenifer annectens (San Diego gophersnake): 139312245
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Entry
139312245 CDS
T11059
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcae04121
]
139312245 (PDZRN3)
Enzymes [BR:
pcae01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139312245 (PDZRN3)
Ubiquitin system [BR:
pcae04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
139312245 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
Sina_ZnF
zf-RING_5
zf-C3HC4_4
Prok-RING_4
PDZ_Tricorn
zf-TRAF
TRAF3_RING
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
139312245
NCBI-ProteinID:
XP_070792962
LinkDB
All DBs
Position
Unknown
AA seq
1059 aa
AA seq
DB search
MGFELDRFNGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVKCQRMS
TKELNHVLPLKSLILKLDIKCANRERGCEKVVKLQHLAEHAEMCDYSPAKCRHKGCAEVL
NLRDVDAHMRESCEARPVGICEQGCGLVLTHRERKAGSHCCLQALKAHNGALQAKLAGLE
KELKKEALRAGKREKSLLSQLSAVQLELQMTALRYQKKFTEYSARLDSLGRSLAAFSPSK
GEETKTLNLILHRDSGSLGFNIIGGRPCMDNQDGPTSEGIFVSKIADSGPAAKEGGLQIH
DQIIEVNGKDLSKATHDQAVEAFKTAKDPIVVQVLRRTPRTKIFSPSQECLLVDIGTQTE
ITFEHIMALTKMGSPTPPVLDPYLLPEEHSSGHEYYDPNVYMGGIHQDMDREDLELEEVD
LHRVNSQDKFGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EEAVALLTSEESKNVSLLIARPEILQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
NMLQQKKKNEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHVTSSNT
LGSQKKLAYSQDTLGSGDMQFSNESFISADCTDADFLGISVDECERFRELLELKCQVKST
NPYSLYCPSSTLDMSKSDHESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQFREPW
MLHNSGFCNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLDISPNNSL
CRTADPLTLQGREGAEGTLKLLLPSSEDQESSLANPPPPKDADLSQPSEIKERKINEESN
SSVPAPKAGGSSLSSYQHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCK
DWNSSNQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIREERSGMTTDDDAISEM
KMGRYWSKEERKQHIVKAKEQRKRREFMMQSRLECLKEQQGTEDKKEMNIIELSHKKMMK
KRNKKIFDNWMTIQELLTHGTKSPDGTKVYNSFLSVTTV
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgagctggatcgcttcaacggggaggtggatcccgatttcaaatgcaatctg
tgcaacaaagttttggaggaccctctcaccaccccttgcggtcatgtgttctgcgccggc
tgcgtcctgccgtgggtcgtgcaacaaggcagctgcccggtgaagtgccagcggatgtcc
accaaggagctgaaccacgtcctgcccttgaagagcctcatcctcaagctggacatcaag
tgcgccaaccgcgagcggggttgcgagaaggtggtcaagctgcagcatttggccgagcac
gccgagatgtgcgactactcgccggctaagtgccgccataagggctgcgccgaagtgctc
aacttgcgcgacgtggacgcgcatatgcgcgagagctgcgaggcccggccggtggggatc
tgcgagcaaggctgcggcttggtgctcacccatcgcgagcgcaaggccggctcccactgc
tgcctgcaggcgctcaaggcgcacaacggcgccctccaagccaaactagccggcctggag
aaggagctgaagaaagaggcgctgcgggccggcaagcgggagaagtcgctcctctcgcag
ctctcggccgtgcagctcgagctccagatgacagcgctgcgctaccagaagaagttcacc
gaatacagcgcccgcctcgactcgcttggccgtagcctggccgccttttcgcccagcaag
ggtgaagagacaaagacattgaatcttattcttcatcgtgattcaggatctcttggattt
aatataattggtggtcgtccatgtatggacaatcaagatggcccaaccagcgaaggaatc
tttgtctctaaaatagctgacagcgggcctgctgccaaggaaggaggactccagattcat
gaccagattattgaagtaaatggaaaagatttgtccaaggcaactcacgatcaagctgta
gaagcctttaaaacagctaaagatcccattgtagtgcaagtcctgagaagaactccacgc
accaagatcttcagtccttctcaagagtgtctcttggtagacataggcactcagactgag
attacctttgaacatatcatggctctaaccaaaatgggctcacctaccccgccagtcctg
gatccatatctcttacctgaggagcattcatcagggcatgaatactatgaccccaatgtt
tacatgggaggcattcatcaagacatggacagagaggacctagaattagaggaagtggat
ctacatcgagtgaacagccaggacaaatttggtcttactgtctgctacagaactgatgat
gaagatgatattggtatttatatcagtgagattgatcccaacagcattgctgcaaaggat
ggccgtatcagagagggtgatcgcataattcaaattaatggaattgagatacagaatcga
gaagaagctgtagctcttttgaccagtgaagaaagcaagaatgtctccttactcatagca
aggccagaaattctccagctagatgagggatggatggatgatgacagaaatgattttctg
gatgacttacatatggacatgctggaggaacagcaccaccaagcaatgcagtttactgcc
aatatgctacagcagaaaaagaaaaacgaagaggatggtggtaccacagatactgcaacc
attttatccaaccaacacgaaaaagacagtggcgtagggcgtacagacgacagcactcgg
aatgacgaaagctccgagcaagagaacaatgccgatgatcacgttacttcctcaaacact
ttgggaagccaaaagaaactcgcttatagccaggacacactgggcagcggtgacatgcag
ttcagcaatgagtcatttatttcagctgattgcacagatgcagacttccttggcatctca
gtggatgagtgcgagaggtttcgtgaactgctggagctgaaatgccaggtcaaatccaca
aacccatacagcctgtactgccccagcagtactctggatatgagtaaaagtgaccatgag
agtgtggatagggagctggagatgctgaatgaggagctgcgtaatattgagctggagtgt
cttaatattgtccgagcccataagatgcagcaattgaaggaacagtttcgagagccgtgg
atgctgcataacagtggcttctgcaactacaataccagcattgatgtccgccgacatgag
ctctcggatattactgagctcccagaaaaatcagataaggacagctccagtgcatacaac
actggtgaaagttgccgaagcacaccactcacgttagacatctcccccaacaactctcta
tgtaggacagcagaccctctcactttacaaggcagggagggggcagaaggcactctgaaa
ttgttgttgcctagttcagaagatcaggaatccagtttggctaacccgcctcctcccaaa
gatgctgaccttagccagccatcggaaatcaaggaaaggaaaattaacgaagaaagcaat
agctcagttccagctcccaaagcaggtgggtcctctttgtcttcatatcagcattctcca
tacaagcatgcccatattccagcccatgcccaacactaccagagctacatgcagctgatc
caacagaagtccgcagtggaatatgcgcagagccagatgagtttggtgagcatgtgtaaa
gactggaactcttcaaaccagagtgaacccaggatggaatggaaagtcaaggtcagaagt
gacggtactcgctacatcaccaagaggccagtcagggaccggctgctacgagagcgtgct
ataaagatcagagaggagcgcagcggcatgacaacagatgacgatgccatcagcgaaatg
aagatgggccgttactggagcaaggaggaacggaagcagcatattgtgaaggccaaggag
cagagaaagcggcgtgagtttatgatgcaaagtcggttggaatgcttaaaggaacaacaa
gggactgaggacaagaaggaaatgaatatcatagaactgagccacaaaaaaatgatgaag
aaaagaaacaaaaagatatttgacaattggatgacaattcaagaactcctaacccatggc
acaaaatcaccagatgggacaaaagtttacaactctttcctctcagtgactaccgtataa
DBGET
integrated database retrieval system
