KEGG   Pituophis catenifer annectens (San Diego gophersnake): 139312344
Entry
139312344         CDS       T11059                                 
Symbol
WDR82
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
pcae  Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pcae00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    139312344 (WDR82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcae03019]
    139312344 (WDR82)
   03036 Chromosome and associated proteins [BR:pcae03036]
    139312344 (WDR82)
Messenger RNA biogenesis [BR:pcae03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     139312344 (WDR82)
Chromosome and associated proteins [BR:pcae03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     139312344 (WDR82)
    COMPASS/SET1 complex (yeast)
     139312344 (WDR82)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N DSE1_N Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WD_LRWD1 PAC11 PEP5_VPS11_N Beta-prop_WDR35_TULP_N Beta-prop_ACSF4 Beta-prop_NWD2_C Beta-prop_EIPR1 Beta-prop_HPS5 MinC_C SMN_Tudor
Other DBs
NCBI-GeneID: 139312344
NCBI-ProteinID: XP_070793159
LinkDB
Position
Unknown
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHPQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFNMQYDRTCEWTGLKFSNDGKLVLISTNGGIIRLIDAFKGAVLHTFTGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNGETGMKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgacggacaacgtgctgcggagcttccgcgtggccaaggtgttccgcgagaac
tcggacaagatcaactgcttcgatttcagccccaatggcgagaccgtcatctccagcagc
gacgacgactccatcgtgctctacgactgccaggagggaaagcccaagagaacactttat
agtaaaaaatatggagttgatctcatcagatacactcatgctgccaacacggttgtatac
agttccaataaaatagatgatactatcagatacctttctcttcatgacaataaatacatt
agatactttccaggacatagcaagagagttgttgctttatctatgtctccagtggatgat
acctttatatctggctcacttgataagactatcagactttgggatcttcggtcaccaaat
tgtcagggtctgatgcatccacaaggaaaacctgtatgctcatttgatccagaggggctg
atttttgcagctggggtcaattccgaaatggtgaaactttatgatcttcgctcctttgat
aagggtccatttgctacctttaatatgcaatatgaccgaacctgtgagtggactggcctg
aagttcagcaatgatggaaaacttgttcttatttcaactaatggagggatcatacggctc
attgatgcctttaaaggagcagttcttcatacatttacaggatataataatagcaaagct
gtcacattggaagcttcattcactccagattctcagtttataatgattggatcagaggat
gggaagattcatgtctggaacggagagactggaatgaaggtagcagtgcttgatgggaaa
cacacaggacccattacctgtttgcaattcaaccccaagtttatgacatttgccagtgca
tgctccaatatggccttttggttgccaactatagatgactaa

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