Pituophis catenifer annectens (San Diego gophersnake): 139312470
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Entry
139312470 CDS
T11059
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139312470 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcae03041
]
139312470 (DDX46)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139312470 (DDX46)
Spliceosome [BR:
pcae03041
]
Complex A
U2 snRNP components
U2 related factors
139312470 (DDX46)
Complex B
139312470 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
139312470
NCBI-ProteinID:
XP_070793392
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
MGRESRSTKQQLSKQKQHYRKRSSSRGRSGSRSRSRSPSDKRAKRVDDRRSRSRERDRRR
ERSRSRDKRRSRSRDRKRVRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPGK
SKKVENRSRSTEKIEGVEVNKDKKKEKEDKEEEKDKDVNNFDQNKLEEEMRKRKERVEKW
REEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEEIAEGEKEGNEIEDEELDPLDA
YMEEVKEEVKKFNMRSVKGGAGSEKKSGPTVTKVVTVVKTKKASPETEKKKGELMVNDQD
AMEYSSEEEEVDLQTALTGYQTKHRKLLEPVDHGKIEYEPYRKNFYVEVPELAKMTLEEV
NAYRLEMEGIIVKGKGCPKPIKTWVQCGISMKILNSLKKHGYEKPTPIQAQAIPAIMSGR
DLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSK
TLGVRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDE
ADRMFDMGFEPQVMRIVDNVRLDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVC
SDVEQRVIVIEEESKFLKLLELLGHYQEKGAVIIFVDKQEHADGLLKDLMRASYPCLSLH
GGIDQYDRDSIINDFKSGVCKLLVATSVAARGLDVKHLMLVINYSCPNHYEDYVHRAGRT
GRAGNKGYAYTFITEDQARYAGDIIKALELSGTTVPPELEKLWTDFKDQQKAEGKTIKKS
SGFSGKGFKFDETEEALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDM
ASSGGSSNVPAPTAGNAEKLEIAKRLALRINAQKNLGAEAQVLVSFQFKDVMQQATNAIL
RGGTIQAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEEKQEGGQNESFKRYEEELEINDF
PQTARWKVTSKEALHRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKA
KAEITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgggaatcgagatcaacaaagcaacagttgtccaaacaaaaacagcattatcgg
aagcgctcctcatcacgagggcgctctggtagccgttcccgcagtcgttctccatctgac
aaaagagcaaaacgtgtagatgacaggcgttctaggagtagagagagagaccgtaggcgt
gagagatcacggagcagggacaagaggaggtctcgatcgcgtgacagaaaacgggtgagg
cgctcaagaagtagagagagggaaaggagtagagagagaagacgatcacgcagccgagag
agaagacgatctagaagccggagcagaggcagacggtctcgatcttccagccctggcaag
agcaagaaggtagaaaacagatcacgctctacagaaaagatagaaggtgtggaagttaac
aaagacaagaaaaaagagaaagaggacaaggaagaagaaaaggataaagatgtaaataat
tttgatcaaaataaattggaagaggaaatgagaaaacgaaaagaacgagtagaaaaatgg
agagaagagcagcgcaagaaagctatggaaaatataggagaactgaagaaagaaattgaa
gagatgaagcaggggaagaaatggagtttagaagacgatgatgatgatgatgaagaaatt
gcagaaggagaaaaagaaggtaatgaaattgaagatgaagagttagatccactagatgca
tatatggaagaagtaaaagaagaggtcaagaagtttaatatgagaagtgtaaaaggtgga
gctggaagtgaaaagaaatcgggtccaacagttacaaaagtagtaactgtagtgaaaacc
aaaaaagcttctccagagactgaaaagaagaaaggagaactcatggtgaatgatcaagat
gcaatggagtattcctctgaagaggaggaagttgatctccagactgcactgacaggctac
caaacgaaacataggaaattgctggaaccagtggatcatgggaagattgaatatgagccc
tacagaaaaaatttctatgttgaagttcctgagctagccaaaatgactctggaagaggta
aatgcatacagattggaaatggaaggaattatagtcaagggtaaaggatgtcccaagcca
atcaaaacctgggtacagtgtggtatttctatgaaaatcctgaattccttgaaaaaacat
ggctatgaaaagcccacccctatccaggcccaagctatacctgcaattatgagtggacgt
gatttaattggcattgctaaaacaggaagtggaaagacaattgcatttctgctgcccatg
ttcagacacattatggatcagagatcattagaagaaggcgaaggtccaatagctgtcatt
atgacacctactcgagaactagccctacagattacaaaggaatgtaagaaattctcaaag
actcttggggttagagtcgtgtgtgtatatggaggaacgggaataagtgaacagattgct
gaactgaaaaggggtgcggaaataatagtttgcacacctggccgtatgatagatatgtta
gcagctaacaatggtcgggtgacaaatcttcggagagtgacatacgttgtccttgatgaa
gcagatagaatgtttgacatgggctttgagcctcaggttatgcgcattgtagacaatgtg
agacttgatcgccagaccgtgatgttttctgctactttccctagagccatggaggcttta
gctcgccgtattctcagcaaaccaattgaggtccaagttggtggcagaagtgttgtctgt
tcagatgttgaacagagagtgattgtcatagaggaagaaagcaagttcttgaaattgctt
gagctactaggacattatcaggaaaaaggagctgtcattatatttgtggataaacaggaa
catgctgatggattactgaaagacttgatgagagcttcttacccctgtctttcacttcat
ggaggtattgaccaatatgacagagacagcataatcaacgattttaagagtggagtatgc
aaactgcttgtagctacatcagtagcagctcgaggtcttgatgtaaagcatcttatgctt
gtaatcaactatagttgtcctaatcattatgaggattatgtgcacagggcaggcagaact
gggcgtgcaggcaacaaaggttatgcctatactttcataactgaagatcaagcacggtat
gctggtgatataattaaagctttggagttgtcaggtaccacagttcctcctgagctagag
aagctttggactgatttcaaagatcagcagaaagctgaggggaaaacaattaaaaagagt
agcggcttctctggtaaaggattcaagtttgatgaaacagaagaagctttggctaatgag
cggaagaagttacaaaaagcggcacttggcttgcaggattcagatgatgaagatacagca
gttgatattgacgagcagattgaaagcatgttcaattcaaagaaaagagtgaaggacatg
gcatcatctggtggttcatctaatgttcctgccccaacagcaggaaatgcagagaaatta
gaaattgctaagagattggcattgagaatcaatgcacagaagaatcttggagccgaggca
caagtattggtctctttccagtttaaggatgtgatgcagcaagctacaaacgctatcctg
aggggtggcacaattcaggctccaacagtttctgcaaaaactattgctgagcaactcgct
gagaagatcaatgccaagctcaattatgtgcccctcgaaaaacaagaggaggagaagcag
gagggtggacaaaatgaatcttttaagagatatgaggaagaactggagatcaatgatttc
cctcagactgctagatggaaagtgacttcaaaggaagcactgcacagaataagtgaatat
tctgaagctgccattacaatcagaggaacctattttcctccaggcaaagaacccaaagaa
ggggaaagaaaaatttacttggctattgagagtgccaacgaattggctgttcagaaagca
aaggcagaaatcactaggcttatcaaagaagagcttatccgattgcaaaattcataccaa
ccaaccaacaaaggaagatacaaagttttataa
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