Pituophis catenifer annectens (San Diego gophersnake): 139312487
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Entry
139312487 CDS
T11059
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03440
Homologous recombination
pcae03450
Non-homologous end-joining
pcae04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139312487 (RAD50)
03450 Non-homologous end-joining
139312487 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
139312487 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcae03032
]
139312487 (RAD50)
03400 DNA repair and recombination proteins [BR:
pcae03400
]
139312487 (RAD50)
DNA replication proteins [BR:
pcae03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
139312487 (RAD50)
DNA repair and recombination proteins [BR:
pcae03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
139312487 (RAD50)
BRCA1-C complex
139312487 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
139312487 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_24
AAA_29
DUF2703
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
139312487
NCBI-ProteinID:
XP_070793420
LinkDB
All DBs
Position
Unknown
AA seq
1323 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVITFFNPLTILVGPNGAGKTTIIESLKYICTGDFPPG
SKGNSFVHDPKVANETDVRAQIRLQFHDVNGELVAVQRSMVCSQKGKKTEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMIAALGVSKSVINNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQGQRVKDCQVELKYLKQNKEKAQEIQNQLTSRETQLAASKEN
VRHIENQLEPLKNSLMKIEQNLVKVMGLDNESKALESRRKQMEKDNQDLQQKMEKVFQGS
DEQLRRMYQNHQKTVREKEKRLTECQRELEAVNKEFLRFNKEKSELLVEQGRLQLQADRY
QQHIRTRDSLIQTLAAQLELEGFERAPLNERQINRFQRLVKERQDKDMETANNLMKEFGV
KETMKQKQIDEIRDKKTGLEKTIVLKSDIQNKKQLEVKNLKQELHQLEGSSNRLLELDQE
LTKAKHELAEAEKNCNVETLEIEIKELQSEKTNLDSTLRKLDKEMEQLNLNTTIITQMDM
LKKDKADKEDQIRKIKFRHNEELICLLGFFPSKNQLEDWLHSRVKEINQTRDKLAKLNKE
LVSAEQNKSHITTELRKKEEQLSTYEERLFDVCGSQDFESDLNKLQHDIDKTSKQRAMLA
GATAVYSQFITQLTDESQSCCPVCQRVFQTEAELQDVINDLQAKLRLAPDKLKTTESELK
KREKKRDDMISLKPIRQTVSELQEKDIPELRNKLQVLNREIQILKTDIEEQETLLGTIIT
EEESAKACLQDITLMERDQIDLKDVERKIAQQAARLQGVDLGRTLLQVSQEKQEKKHQWD
TVTSKIELKQTLKQDQQNQVQHLKCTVNELKAEKLQISSSMQRRQQLEEQTVELTTEVQS
LNREIKEAKEQLFPLETTLGKLQQEKEELSNKKNTSYKITQEKINDIKEKVKNIHNHMKE
IENYIQEGKEEYKQQKESELEEVTVELVDCEKQKEKINKETGTIRQDIDTQKIQERWLED
NLTLRKRNEDLKEVEDNIKQLLKEMGEMQVPQLKRNQKHLEEKIEDLKRSHSLALGRQHG
FEEEILRYKRELKEQQFKDAEEKYREMMIVMRTTELANKDLDIYYRALDQAIMTFHSMKM
KEINKIIRDLWRSTYRGQDIDYIEIRSDADENISASDKRRSYNYRVVMTKGDTALDMRGR
CSAGQKVLASLIIRLALAESFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLSRSEYVEKFYRIKKNLDQCSEIVKCNVTTLESYVHFQMTHSRD
SSK
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgataaaatgagcattcttggagtgaggagctttggtgtggaggataaa
gataaacaagttatcactttctttaatcctctaactattttggtgggtccaaatggtgct
ggaaaaacgactatcatagaatccctcaaatatatttgtactggggacttcccacctggc
agcaaaggaaattcatttgtccatgatccaaaagttgccaatgaaacagatgtcagagct
caaataagacttcaatttcatgatgttaatggggagcttgttgctgtccagcggtccatg
gtatgttctcagaaaggaaagaagacagaatttaaaactcttgaaggagtaattacaaga
ataaagcatggggagaaagtcagtctgagctccaagtgtgcagaaatcgaccgagagatg
attgctgcccttggagtttctaagtctgtaattaataatgtcattttctgccatcaagaa
gattccaactggcctctaagtgaaggaaaggccctgaaacagaaatttgatgaaatattt
tcagcaacaaggtatattaaggctttggaaacacttcgccaggtgcgtctaaaacaaggg
cagcgagttaaagactgtcaggtggagctgaagtacttgaagcagaataaagaaaaagca
caagagatccagaatcagctaactagcagggaaactcagttagctgcctccaaagaaaat
gtcagacatattgaaaaccaactagagcctctaaagaactctttgatgaaaatagagcag
aatcttgtaaaagtaatgggactagataatgaaagcaaagctctggaaagtcggagaaag
cagatggaaaaggataatcaagacctgcaacaaaaaatggagaaggtttttcaaggaagt
gatgaacaacttagaagaatgtatcaaaaccatcagaaaactgtgagagaaaaggagaag
cggttaacagagtgtcaacgagaactggaggcagtaaacaaagaattcttaagatttaat
aaagaaaaatcagaattattagttgaacaaggtcgtcttcagttacaagcagatcgttac
cagcagcatatcagaacccgagattcgttaattcaaactttggcagctcagttggaattg
gaaggatttgaaagagcacccttaaatgaaagacaaatcaatcgttttcagaggctggta
aaagagagacaggacaaagatatggaaactgctaataatttaatgaaagaatttggcgtg
aaggaaacaatgaagcagaaacaaattgatgaaataagggataaaaaaactggacttgaa
aaaactattgtcctaaagtcagatattcaaaataagaaacaacttgaagtaaagaattta
aaacaggaattacatcagctggaaggatcctcaaatcgacttctagaactggatcaagaa
cttacaaaagcaaaacatgaattagctgaagctgagaaaaattgcaacgttgaaacccta
gaaatcgaaattaaggaactgcaaagtgaaaaaacaaatttggacagtactcttcggaaa
ctggataaagagatggaacaactgaacctgaatactacaattataacccaaatggatatg
cttaaaaaagataaagctgacaaagaagaccaaatcagaaaaattaaatttagacacaat
gaagaattaatctgcttgttgggatttttcccaagcaaaaatcaacttgaagattggctt
cattcaagagttaaagaaattaatcagacaagagacaagcttgccaagctcaacaaagaa
cttgtttcagcagaacaaaacaaaagtcatattaccactgaactaaggaaaaaggaagaa
cagctgtccacatatgaagaaaggctttttgatgtctgtggaagtcaagactttgaaagt
gatcttaataaactgcagcatgatattgataaaacatccaagcagcgagcgatgcttgca
ggagccacagcagtttattcgcagttcatcacacaactaacagacgaaagccagtcatgt
tgcccagtgtgtcagagggtctttcaaacagaggcagaactgcaagatgtcataaatgat
cttcaagcgaaattgcgccttgctccagacaaactgaagacaacggaatccgaacttaag
aaaagggagaaaaaacgtgatgatatgatttctctgaaacctatcagacaaacggtatct
gaactccaagaaaaggatatacctgagttgagaaacaagctacaggtccttaatagagag
attcaaatccttaaaactgatatagaagaacaggaaactctcttgggtactatcataaca
gaggaagaaagtgcaaaagcatgtctgcaggatattacacttatggaaagggatcagatt
gatctaaaggatgttgaaagaaaaattgctcagcaggcggctaggctccagggagtggat
ttgggccgaactcttttgcaagttagccaagagaaacaggaaaaaaaacatcagtgggac
acagttactagcaaaattgaactgaagcagacactcaagcaagaccaacaaaatcaagtc
cagcatttaaagtgcacagtaaatgaactcaaagctgagaaacttcagatatctagcagc
atgcagcgtcgacagcaacttgaagaacagactgtagaattaacaaccgaggtgcaatca
ttaaatagagagatcaaggaagcaaaagaacagttatttcctttggaaacaactttggga
aaactacaacaagaaaaagaagagttgtcgaacaaaaagaatacaagttacaaaataaca
caagagaagataaatgacattaaagaaaaagttaaaaatatccataaccatatgaaagag
attgagaattatatccaagaagggaaagaagaatacaaacagcaaaaggaatctgaactg
gaggaagtcacagttgagctagtagattgtgagaaacagaaagagaagataaataaagaa
acgggaacaattaggcaagatattgatacacaaaagattcaggaacgatggttagaagat
aatcttactttaagaaaaagaaatgaagatctaaaagaagttgaagataacataaaacag
cttttgaaggaaatgggggaaatgcaagtaccacaactgaaaagaaatcaaaaacattta
gaagaaaaaatagaggatttgaaaagaagccatagtttggcacttggtcggcagcatgga
tttgaggaggagatcctgagatataagagagagctgaaagaacaacagtttaaagatgct
gaagagaaatatagagaaatgatgatagttatgcggaccacagaactggcaaacaaggat
cttgacatttactatagagcactggatcaagcaataatgacatttcatagcatgaaaatg
aaagaaattaacaagataattcgtgacctgtggcgaagcacatacagaggacaagatatt
gactatatagaaattcggtctgatgctgatgagaatatctctgcttctgacaaaaggagg
agttacaattacagggtagtcatgacaaaaggagacactgctttagatatgaggggcagg
tgcagtgctggccaaaaggttcttgcctctctcattattcgtcttgctctggctgaatcc
ttctgtctcaattgtggtattcttgcattggatgagcctaccaccaatcttgaccgagaa
aatattgaatctcttgcacatgctttggtggagataatcaaaagtagatctcagcaacgt
aactttcagctgcttgtgataacccacgatgaagattttgtggagctgttgagtcgatcc
gaatatgtggagaaattctatagaattaagaagaaccttgaccagtgttctgagattgtg
aaatgcaatgtcacaactttggaatcatatgttcacttccaaatgactcacagtagagat
tcttccaaataa
DBGET
integrated database retrieval system
