Pituophis catenifer annectens (San Diego gophersnake): 139312545
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Entry
139312545 CDS
T11059
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139312545 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139312545 (XAB2)
03041 Spliceosome [BR:
pcae03041
]
139312545 (XAB2)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139312545 (XAB2)
Spliceosome [BR:
pcae03041
]
Complex B
Other components
Prp19-related factors
139312545 (XAB2)
Complex C
139312545 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
ARM_TT21
ARM_TT21_C
RPN7
TPR_1
TPR_16
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
139312545
NCBI-ProteinID:
XP_070793521
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MGGQPNARLRRGTDLTLNFERXGRRDVIFARRIWPRQGKAAMPESETVSGKRELFFEEED
LQYEEEILRNPFSVKCWIRYIDFKQNAPKHTLNLIYERALKELPGSYKLWYNYLKQRRKQ
VKSKCVTDSCYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRITRTRRTFDRALRALP
ITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLRSIDRLDEAAVRLG
AVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIRGGLTRFTDQLGKLWCS
LADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMETNSEMGREE
DDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVKLYEGKPWEIINTYTEA
VQTVDPFKATGKTHTLWVSFAKFYETNGQIEDARTIFEKATKVNFKQVDELASVWCEYGE
MELRHENYDQALRILRKATAIPAKKAEYFDSTEPVQNRVYKSLKVWSMLADLEESLGTFK
STKAVYDRILDLRIATPQIIINYGLFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL
TKFIDRYGGKKLERARDLFEQALDGCPQKFAKTIYLLYARLEEEYGLARHAMAVYERATQ
AVLPSEQHDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLSDEHARDMCLRFADMECKLGEI
DRARAIYSYCSQMCDPRTTANFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFM
ASQMLKVYSNATGTVSDLAPGQSGMDDMKLLEQRAEHLAAEAERDQPRAKEKILFVRSDA
SRSELAELSKRANPDEIDIDLDDSDESEDNEPDEVQLEQKTVPSAVFGGLKDD
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgggaggccagcccaatgcgagactgagacgagggacagatttgacgttgaatttcgaa
cgcnaagggagaagagacgtcatctttgcgcgccgtatttggcctcgacagggaaaggcc
gcgatgccggagtcggagacggtgtcaggaaagcgggagcttttcttcgaggaggaagac
ctccagtatgaagaagagatcttacgcaatccattctctgtcaagtgctggatccgctat
attgacttcaagcaaaatgctcccaaacataccttgaatctgatctatgagagagctctt
aaggaattgccaggaagctacaagctctggtacaactaccttaagcagaggcggaaacaa
gtgaagagcaaatgtgtaacagattcctgctatgaagaagtgaacaactgccatgagcgt
gccttggtcttcatgcataagatgcctcggatatggctagattactgccagtttctcatg
gaccaatgtcgcatcacccgtacccgcaggacatttgaccgggcgctcagagctctgccc
atcacacagcaccatcgtatctggccactttacctgaagtttgtgcgactctatccatta
cctgagacagctgtacgggtctaccgtaggtacctaaagctgagccctgagaatgcagag
gaatatattgagtacctgcgctccattgaccgtctggatgaagccgctgttcgtcttgga
gctgtggtgaatgatgagcgttttgtttccaaggagggaaaatcaaattatcagttgtgg
cacgagctctgtgatctcatctctcaaaatccagacaaggtgaagtcactcaatgtgggg
gccatcatccgaggtggcctgactcgtttcacagaccagttgggcaagctgtggtgttct
ttggcagattactacatccgcagtggccattttgagaaggctcgtgatgtgtatgaagaa
gctattcagacagtgatgacggtacgggatttcactcaagtatttgacagctacgcccaa
tttgaggagagcatgattgctgctaagatggagaccaactctgaaatgggacgtgaggag
gatgatgatgtagatctggaactgcgtctggcacgctttgagcagctgatcacacggcgg
cctctgcttctcaacagtgtcctcctgcgccagaatcctcacaacgtccatgagtggcac
aagagggtgaagctatatgaaggcaaaccttgggagatcatcaacacgtacacggaagca
gtgcagactgttgacccatttaaagccactggaaagacacatactttgtgggtttctttt
gccaagttctacgagaccaatggacagatagaagatgccagaacaatttttgaaaaggcc
actaaggtgaactttaagcaggtggatgaactggccagcgtctggtgcgagtatggtgag
atggagctgcggcatgagaactacgatcaagccctgcgtatcctgaggaaagctacagct
atcccagctaagaaagccgaatattttgattccacagagcctgtgcagaaccgtgtatat
aagtccctcaaggtttggtccatgctggctgacttggaagaaagtctcggcactttcaaa
tctactaaggctgtatacgatcgcattttggatcttcgcattgccaccccacaaatcatc
attaactatggtctgttcctggaggagcacaaatattttgaagagagcttcaaggcatat
gagagaggcatctccttgtttaagtggccaaatgtttatgatatctggaacacctatcta
accaaattcattgaccgttatggtggcaagaagttggagcgtgctcgggatctttttgag
caggccctggatggctgtccccagaaatttgcaaaaaccatctatctgttatatgccagg
ctggaggaggaatatgggctggcccgccatgccatggcagtatatgagcgagctactcag
gctgtgctgccttcagagcagcatgatatgtacaacatctacatcaagagagcagctgaa
atttatggcgtcacccacacacgtagcatctatgagaaggcaattgaggtgctatcagat
gaacacgctcgggacatgtgtctgcgctttgctgatatggaatgcaaattgggtgaaata
gaccgagctcgggcaatctattcctattgttcacagatgtgtgacccccgaactacggcc
aacttctggcagacatggaaagaatttgagattcggcatgggaacgaagacactatccga
gaaatgctgcgcattaagcgaagtgtacaggctacttacaacactcaagttaacttcatg
gcttctcagatgctaaaggtttacagcaatgccacaggcacagtgtctgacttagcacca
ggacagagtggcatggatgacatgaagctcttagagcagcgagcagaacacctggcagcc
gaagcagaaagagatcagcctcgagctaaggaaaagatcttgtttgtcaggagtgatgct
tcccgcagtgaattggctgaactttccaagcgggccaatcctgatgagatagacatcgat
ttggatgacagcgatgagagtgaagacaatgagcctgatgaggtgcagctggaacagaag
accgtcccctctgctgtgtttggtggccttaaagatgactga
DBGET
integrated database retrieval system
