Pituophis catenifer annectens (San Diego gophersnake): 139312643
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Entry
139312643 CDS
T11059
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139312643 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcae00536
]
139312643 (COL5A2)
Glycosaminoglycan binding proteins [BR:
pcae00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139312643 (COL5A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
139312643
NCBI-ProteinID:
XP_070794124
LinkDB
All DBs
Position
Unknown
AA seq
1498 aa
AA seq
DB search
MMAIWTQRRTFVILIAFLGHLGTIRTQEEDEFEGDFEEEEEIACTQNNQVYLNRDIWKPT
ECQICVCDNGAILCDAIQCLEALECENPQVPPGECCPTCPNTARNGFEGSIGRGLKGQKG
EPGVVPVVTGIRGRPGQSGPPGSQGPRGARGPKGRPGARGPPGIDGEPGVPGQPGDPGPP
GQPSTGPDGIGRPFTSQMAGQDEALAHMMMPGPVGPVGPRGAPGNHGKQGPIGPPGAPGE
VGDPGSMGSPGVRGPEGPPGKPGEDGESGRPGQPGEVGFPGSPGARGFPGTPGHQGLKGP
RGEKGLDGPKGELGAHGSKGESGPSGQMGATGPMGPRGMAGERGRIGPQGVPGARGSHGM
PGKPGPAGPLGIVGSSGFPGIPGMKGEAGPTGARGPEGPQGPRGETGAPGPPGLFGLPGA
LGTDGSRGTKGPSGSPGTSGPHGLSGPPGSPGPQGSTGPPGIRGQTGDPGVPGFKGEAGP
KGEPGPHGLQGPIGPVGEEGKRGPRGDPGSVGISGPVGERGPPGNRGFPGSDGLPGPKGA
QGERGPAGASGPKGSQGDPGRLGEPGLPGARGLTGNPGVSGPEGKLGPLGAPGEDGRPGP
AGPIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNPGVSGQRGAPGKDGEVGPAGPVGPHGP
AGERGEQGPPGPTGFQGLPGTPGPPGEGGKPGDQGVHGDPGALGPLGPRGERGHPGERGN
PGSPGLQGEKGMAGGQGPDGPKGNPGPSGASGDQGPPGLQGMPGERGLAGTPGPKGDRGS
IGEKGGEGTAGNDGARGLPGPLGPNGPAGPAGEKGEPGPRGLVGPAGSRGNPGSRGENGP
TGPVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLSGSHGPPGPPGVHGLKGGRGT
KGPPGATGFPGSAGRVGPPGPTGAPGPVGPLGEPGKEGPPGVRGDPGGHGRVGDRGPAGP
SGGSGDKGDSGEDGQHGPDGPPGPSGTTGQRGIVGMPGQRGERGMPGLPGSAGTPGKQGP
TGPTGDKGPSGPIGPPGASGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGLPGS
QGIPGTPGPVGSPGDAGQRGEPGSRGPVGPPGRAGKRGLHGPQGPRGDKGDNGDRGDRGQ
KGHRGFTGLQGLPGPPGPTGEQGSAGIPGPFGPRGPPGPIGPSGKEGNSGPHGPVGPPGV
RGTLGEAGPEGPPGDPGPPGPPGPPGHLTAAIGDIMGHYDDGLADPLPEFTEDEAAPDDS
NKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLRSCHPSKKSGEYWIDPNQGCVE
DAIKAFCNMETGETCIAAKPAIIPRKTWWTSRSSDLKPIWYGLDMNRGSQFVYGDNQSPN
TVITQMTFLRLLSKEASQNITYHCKNSIGYMDDQAKNLKKAVVLKGANDHDIRAEGNNRF
RYTVISDTCSKHNGNVGSTIFEYKTQNVARLPIIDIAPVDVGGADQEFGVEIGPVCFV
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgatggccatctggacccaaagaagaacgtttgtcattcttattgcttttctaggacat
ttggggacgatacgaacacaagaagaggacgagtttgaaggggacttcgaagaagaagaa
gaaatcgcctgcactcagaataaccaggtgtacctgaacagggacatctggaaacctaca
gaatgccagatttgtgtgtgtgacaatggagccattctgtgtgatgctattcagtgtctc
gaagcactagaatgtgaaaacccacaagttccccctggagagtgttgtcctacgtgccca
aacacagcccgaaatggatttgaaggttctatcggtagaggactaaagggtcaaaaagga
gaacctggagtagtaccagtggttacgggtatacgaggacggccgggacaatctggacct
ccaggttcacaaggaccaagaggagctcgaggacccaaaggaagaccgggtgcccgtggc
cctccaggaatagatggggaacctggtgtacctggacaacctggtgaccctggacctcct
ggacaaccatccacaggaccagatggcataggcagaccatttacatctcagatggcagga
caagatgaggcccttgcacacatgatgatgcctggtccagtgggtcctgtgggtccaaga
ggagctccaggtaatcatgggaaacaaggtcctattgggcctccaggtgctccaggtgaa
gttggtgacccaggatccatgggttcacctggtgttcgtggcccagaaggtcctccagga
aagcctggtgaagatggtgaatctggcagaccaggacaacctggggaagttggatttcca
ggatctccaggagctcgaggttttcctggtacaccaggtcatcaaggtctaaagggtcct
agaggagagaaaggacttgatggccctaaaggtgaacttggagcccatggatctaagggt
gaatcaggtccatcagggcagatgggtgcaacaggtcctatgggtccccgagggatggca
ggagaaagaggtcgaattggaccacagggcgttccaggggctcgtggttcacatggtatg
cctgggaaaccaggaccagcgggtcctctcggtatagttggttcatcaggttttcctggc
atacctggcatgaagggtgaagctggtcccacaggtgcacgtggtccagaaggtcctcaa
ggaccaagaggagaaacgggtgccccaggtcccccaggattgtttggtcttcctggtgcc
ttaggtacagatggttccagaggtacaaaagggccttcaggatctccaggaacttcaggg
ccacatggcttatcaggtccacctggttctccaggaccacaaggcagcacaggtcctcct
ggcattcgaggacaaacgggagatcctggtgttccaggtttcaaaggagaagctggaccc
aaaggagagccaggtccccatggcctccaaggaccaattggacccgttggtgaagaaggg
aaaagaggtcctcgtggtgatccaggatcagttggtatttctggacctgttggagaaagg
ggtcctcctggtaaccgtggctttccaggatctgatggtttgccaggaccaaagggagct
caaggggaacgtggtcctgcgggggcttcaggccctaaaggaagccaaggggatcctggt
cgcctgggtgaacctggtctcccaggtgccaggggtctgacagggaatccaggggtctca
ggtccagaagggaaacttggtcccttgggtgctccaggagaagatggtcggccaggccct
gcaggtccaattggaattagaggccagccaggcagcatgggtcttcctggcccaaaaggg
agcagtggggatcctggaaaacctggagaagcaggaaatcctggtgtctcggggcagagg
ggggcacctggaaaagatggtgaagttggccccgctggtcctgttgggccccatggacca
gcaggagaaagaggagaacaaggtcctccaggtcccacaggctttcagggtttacccggt
accccaggccctccaggagaagggggaaaaccaggtgatcagggtgttcatggtgatcct
ggagctctaggtcccttaggtccaaggggagaacgtggccatccaggtgaaagaggaaac
ccaggatcacctggtcttcagggggaaaagggtatggctggaggtcaaggtcctgatggt
ccaaagggaaatccaggcccttcaggagcatcaggagatcaaggcccacctggtcttcag
ggaatgcctggagagagaggcctggctggaacacctggccccaagggcgatcggggcagc
ataggagaaaaaggaggcgaaggcacagctggcaatgatggggccagaggactcccaggt
ccattaggcccaaatggccctgcaggtccggctggtgaaaagggtgaacctggtcctcga
ggtttagttggccctgcaggctctcgtggaaatcctggttcccgtggtgaaaatggccca
actggcccagttggatttgctggccctcagggccctgatggtcaacctggtgtgaaaggt
gaacctggggagcctgggcagaaaggagatgctggatccccaggacctcaaggtctttca
ggttctcatggtccaccaggccctcctggggttcatggactcaaaggaggccgtggtaca
aaaggaccccctggtgctacaggttttcctggatctgctggaagagttggacccccagga
cctacaggagctcctggtccagttgggcctcttggtgaaccaggcaaagaaggtcctcca
ggtgttcgtggagatcctggtggtcatggccgagtaggagatagaggcccagcaggacca
tctggcggttctggagacaaaggagactcaggagaagatggacaacatggtcctgatggt
cccccaggtccgtctggaactactggacagagaggtattgtgggaatgcccggccaacgt
ggagagaggggcatgcctggcctgccaggctctgcaggaactcctggaaaacaaggtcca
actggaccaacaggggacaagggtccttctgggcctattggtcctccaggtgcttctgga
ccggtgggtgaagcagggccagagggtcctgctggtaatgatggcactcctgggcgagat
ggagctgttggtgaaaggggtgatcgtggtgagcctggacctgcaggacttcctggttct
cagggtattccaggtaccccagggccagttggatctccaggggatgcgggacaaagaggt
gaaccaggttcacgaggcccagtaggtcctcctggacgtgctggaaaacgaggtttacac
ggtccccaaggtcctcgtggtgacaaaggtgacaatggtgatcgaggggacaggggacag
aaaggtcatcgaggtttcactggcctgcaaggtctccctggacctcctggacctactggt
gaacaaggcagtgctgggattccaggcccatttggcccaagaggtcccccaggtcctatt
ggaccttcaggtaaagaaggaaattctggaccacatggaccggttggacctcctggtgta
agaggaactttaggagaagcaggacctgagggccctcctggtgatcctggtcctccaggc
ccaccaggtccccccggccatcttactgctgcaattggtgatattatgggacattatgat
gatggtctagcagacccactaccagagttcactgaagatgaagctgctccagatgacagc
aataaaacagatccaggagtccatgccacattgaagtcactgagtagccagattgaaacc
atgcgcagtcctgatggatccaagaagcaccccgcccgtacttgtgatgatttaagatca
tgtcatccatccaaaaagagtggagaatactggattgaccctaatcagggctgtgtagaa
gatgcaattaaagcattctgcaatatggaaacaggagaaacgtgcatagctgcaaaacca
gctattattccacgtaaaacatggtggacaagtaggtcatctgatctaaaaccaatatgg
tatggacttgatatgaacagaggttcacagttcgtttatggtgataatcaatcacccaac
acagtgatcacgcaaatgactttcctgcgcttactctccaaagaggcctctcagaatatc
acctatcattgcaaaaacagtataggttacatggatgaccaagctaagaacctgaagaag
gctgtggtgctgaagggagccaatgaccatgatatccgagctgaaggaaacaaccgtttt
agatacactgtcatttctgacacttgctctaaacacaatgggaatgtgggcagcacaatc
ttcgaatacaaaacacagaacgtggcacgattacctatcattgatattgccccagtagat
gttggaggtgcagaccaagaatttggagtagagattggaccagtttgttttgtgtaa
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