Pituophis catenifer annectens (San Diego gophersnake): 139312901
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Entry
139312901 CDS
T11059
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pcae01009
]
139312901 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139312901 (HDAC6)
04131 Membrane trafficking [BR:
pcae04131
]
139312901 (HDAC6)
03036 Chromosome and associated proteins [BR:
pcae03036
]
139312901 (HDAC6)
Enzymes [BR:
pcae01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
139312901 (HDAC6)
Protein phosphatases and associated proteins [BR:
pcae01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139312901 (HDAC6)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
139312901 (HDAC6)
Membrane trafficking [BR:
pcae04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139312901 (HDAC6)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
139312901 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
139312901
NCBI-ProteinID:
XP_070794201
LinkDB
All DBs
Position
Unknown
AA seq
1095 aa
AA seq
DB search
MASDLGNASVLDPISVPALDIQAPLKKANKKGGLPEAKRKGRAKKMNKDAEELLLGLQRL
DLTSECAAPLGTGLIWDNRMTEFCCPWDESFPECPERLVTIRDKLLQYELLERCVPVTGR
EISEEEILLAHSQEYLTLMKSTETMSETELRSLADTFDSVYLHPNFYRCACLAAGSVLQL
VEKVWSGELRNGLAVVRPPGHHAHRSKMNGYCMFNNIGIAAQYARQKLGVERVLIVDWDV
HHGQGLQYLFEENPSVLYFSIHRYEGGNFWPHLPESDSHTVGRGRGEGYNINVPWNQTGM
RDADYLSAFLHVLLPVALEFQPQIVLVAAGFDAVIGDPKGEMAATPACFAHLTHLLKSLA
GGKLVLSLEGGYNLQSLAEGTCMALKTLLGDPCPLMESPFLPCSSALSSVSQTIAIHSKY
WKNLRRISADVPQEDGKLSVAWPPASPLSVADPLSRSAAELIQPQPPSCTGLVYDEKMME
HYNMWDSQHPELPQRVSRIFQRHRELHLTERCYRLPARLASEEELQMCHSLPYVETLKST
ATMKPRDLHRQGDQYNSVYICASSYECARLAAGSAFSAVEAVLSGKTHNAVAIVRPPGHH
AESDTACGFCFFNSVALAARYAQRLAQRRLRVMILDWDVHHGNGTQHIFEDDPSVLYISL
HRYDNGTFFPTSEDADYDRVGVGPGEGFTLNVPWNCSRMGDSEYLAAFHQIIMPVSYEFN
PELVLVSAGFDAARGDPLGGCLVTPECYAHMTHLLLGLAGGKVAVVLEGGYNLESISESM
TMCTRSLLGDPPPPLGRLKPPHLSALQSLARVTAVHRKYWASLRLEVPATLWEKPRTRAG
KETPIPNEIPEQAPQELLQNPVAQPVAEAIEDAVVGLGSLQLEDNLMEEAETASSSLSPD
SSPVGEEAQPKVGGSPKEGCTKDAAEDAPREGVSAEGFSGEVMAPDKKHHRPMNVEVVLL
DEAAGGCSSFDEQFGDDVAGSGLFYVTTPLPWCPHLSSVLPVPPVGLNVWQPCAECGSEM
ENWVCLVCYKVCCGRYINQHMLDHNKESGHPLVLSFADLSAWCYDCQAYIHHPVLLEAKC
QAHRLKFGMDVHLPS
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgatttgggaaatgcctcagtattggatcccatatctgtgcctgctttggac
attcaggctccattgaaaaaggctaacaagaagggagggcttccagaggccaagcggaaa
ggacgggcaaaaaagatgaacaaagatgctgaggaactgcttttgggcctgcagcgactg
gatcttacttcagaatgtgctgctcccttaggaactggactgatttgggataatcgaatg
acagaattttgctgcccgtgggatgaaagtttcccagagtgcccggagcgactggtgacc
attcgggacaaattacttcagtatgaactgttggaacgttgtgtcccagtgacgggccga
gaaatttctgaggaagagatcctcttggctcacagtcaagaatacttgaccctcatgaaa
tcgactgaaacaatgagtgagactgagttaaggtctctggcagatacctttgattctgtt
tacctgcatccaaatttctaccgctgtgcctgccttgctgctggttctgtcttgcaactc
gtggagaaagtgtggtctggagaactccgtaatggtctagctgtggtcaggcctccagga
caccatgctcaccgcagcaagatgaatggctactgcatgttcaacaacataggcattgca
gcacaatatgcccgacagaaattgggggtggagcgggtgcttatcgttgactgggatgtg
caccatgggcaaggccttcaatacctctttgaggagaatcccagcgtcctttatttctcc
atccatcgctacgaaggagggaatttctggccccaccttccagaatctgacagtcacaca
gtgggcagaggtcggggagagggatacaacatcaacgtgccctggaaccagacaggaatg
agggatgctgactacctctctgcctttttacatgtcctactaccggtggccttagagttc
caaccccagatagtcctggtcgctgctggttttgatgctgtaattggtgaccctaagggg
gagatggctgccactccagcatgctttgctcacctgacacacctgttaaagtcactggct
ggaggcaagctggttttatctctggagggtgggtacaatctccagtctttggctgaggga
acctgcatggcccttaagactcttctaggagatccctgtccgctgatggaatcacctttc
ctcccatgtagcagtgctctcagctcagtgtctcagaccattgcaattcatagcaagtat
tggaagaacctacggaggatcagtgctgatgtgccccaggaggatggcaagctcagcgta
gcttggccaccagccagccctctctctgtagccgatcccctctccaggtcagcagctgaa
ctgatacagcctcagcccccttcttgcacggggctagtctacgatgagaagatgatggag
cattacaatatgtgggacagccaacatccagagctgcctcagagagtatccaggatcttc
cagcgccacagggagctgcatctgacagagaggtgctaccggctcccagcccgtcttgct
tctgaagaagagctacaaatgtgccacagcctgccttatgtggagacattgaagtccaca
gccaccatgaaaccccgtgacctgcatcgccagggtgaccagtacaattctgtctacatc
tgtgccagctcctatgagtgtgcccggctggcggccggatccgcattcagtgcagtagag
gctgtgctgtctgggaagactcataatgctgtggctattgtccgcccgcctggacaccat
gcagaatcagatactgcctgtggcttctgcttcttcaattcggtggctttggcagcacgc
tatgcccagcgcctggcccagaggcggttgagggttatgatactagactgggatgttcac
catggcaatggaacacagcacatatttgaagatgatcccagtgttttgtacatctccctc
catcggtacgacaacggcactttcttccccacttctgaggatgcagattatgaccgagtg
ggtgtgggacctggggaaggcttcacccttaatgtgccttggaactgttcccggatggga
gactctgaatatctggctgccttccatcagattatcatgcctgttagctatgagttcaac
ccggagctagtcctggtgtcggctggttttgatgctgctcgaggtgacccattggggggg
tgtctcgtgaccccagaatgctacgcccatatgacccacctcctcttgggtttggcagga
gggaaagttgctgttgtccttgagggtggctacaacctagaatctatctcagagtccatg
accatgtgcacgcgcagccttctgggggatcctccacccccactcggacgcctaaagccc
ccccatctgagtgccctgcagtccttggcccgtgtcactgctgtgcaccgcaaatattgg
gcaagcctccgactggaagtgcctgccactctgtgggagaagcctaggactcgggctggg
aaagaaactcccattccaaatgagattcctgaacaagcccctcaggagttgctccaaaac
cctgtagctcaacctgtagcggaagcgatagaggatgctgtggtgggcttgggctccctc
cagctagaagacaatctcatggaagaggccgaaacggcttcgagttctctctctcctgat
tctagtccagtgggtgaggaagctcagccaaaagtcggtggatcccctaaggaaggatgc
accaaggatgcagcagaggatgcaccaagggaaggggtatcggcagagggcttctctggt
gaagtgatggctcctgacaaaaaacatcaccgcccaatgaatgttgaggttgtcctgttg
gatgaagcagcagggggttgttcttcctttgatgagcagtttggggatgatgtggctggc
agtgggctcttttatgtcacgactcctttaccctggtgcccccacctcagctcagtgctg
cctgtgcctccggtgggcttgaatgtgtggcagccttgtgcagaatgtggcagcgagatg
gagaactgggtttgtctggtgtgctataaggtctgttgtggacgctacattaatcaacat
atgctggatcacaataaggaatctgggcatccgctggtgcttagctttgcagatctctct
gcctggtgctatgactgccaagcctatatccatcacccagtccttcttgaagccaagtgc
caggctcacaggctgaagtttggcatggacgtgcacctgccttcctaa
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integrated database retrieval system
