KEGG   Pituophis catenifer annectens (San Diego gophersnake): 139313106
Entry
139313106         CDS       T11059                                 
Symbol
APTX
Name
(RefSeq) aprataxin isoform X1
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
pcae  Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pcae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    139313106 (APTX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pcae03400]
    139313106 (APTX)
Enzymes [BR:pcae01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     139313106 (APTX)
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     139313106 (APTX)
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     139313106 (APTX)
DNA repair and recombination proteins [BR:pcae03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     139313106 (APTX)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     139313106 (APTX)
SSDB
Motif
Pfam: DcpS_C FHA_2 zf-C2HE HIT FHA FtsK_SpoIIIE_N zf-C2H2_6 zf-C2H2 zf-C2H2_4
Other DBs
NCBI-GeneID: 139313106
NCBI-ProteinID: XP_070794586
LinkDB
Position
Unknown
AA seq 358 aa
MATWSTMRVCWLVSKDRSCQRIKLPHLEMVVIGRGPDTEITDKKCSRKQVQLKADYNKGY
VKVKQIGVNPTSIDLVDVGKNQETKLKPGQILHIVNKLYPYTVQFLEEMGTCAGRENKKL
AEKSEKRPHSESENKNVESLSGKQIKTDQVELQNYNLYNEVTDGSSVSSLESSSTKMECM
PYWAQGLKVSMLNPDMQVYKDEQVVVIKDKYPKARYHWLVLPWKSISTLFAVTHEHLELL
EHMHKVGEMIIQQCLEKDSLHFRLGYHAIPSMSQLHLHVISQDFDSKWFKTKKHWNSFTT
NYFLDSTDVIAVIKKKGKVTVDKNALLLLTLPLKCHMCEKQLPTIPQLKEHLKEHWPK
NT seq 1077 nt   +upstreamnt  +downstreamnt
atggcaacgtggagcacaatgcgtgtatgctggctagtgagcaaagatagaagctgtcag
cgaattaaactaccacatttagaaatggtggtgatagggcgtgggcctgacacggagata
acagacaagaagtgttcacgaaaacaagtacaactaaaagcagattacaacaaagggtat
gtcaaggttaaacagataggagtcaatccaaccagtattgatctagtggatgttggcaaa
aatcaagaaacaaaactgaagccaggacagattctccatattgtcaacaaattgtatcca
tacactgtacaattcttggaggaaatgggcacatgtgctggtcgggaaaacaagaagctt
gctgaaaaaagtgaaaaaaggccacacagtgaatctgagaacaaaaatgtggaaagctta
tctggaaaacaaataaaaacagatcaggtggagttgcaaaactacaatttgtacaacgag
gtgacagatggcagttctgtttcttcacttgaaagctcttctaccaaaatggaatgtatg
ccatactgggctcaaggtctgaaggtttctatgctaaacccagacatgcaggtttacaag
gatgagcaagttgtagttataaaagataaatatcccaaagctcgctatcactggttagtg
ctgccctggaaatccatttccactttatttgcagtaactcatgagcatcttgaactgttg
gaacatatgcacaaggttggagaaatgataatccagcagtgcctggagaaagacagcctg
cacttcagactaggctaccatgccattcccagcatgagccagctacatcttcatgtcatt
agccaagactttgattctaagtggtttaaaaccaagaagcattggaattctttcacaacc
aattacttcttggattctacagatgtgatagcagtgataaaaaagaaaggaaaagtaact
gtggataagaatgctctcctacttctaacactgcctctgaagtgccacatgtgcgaaaag
caactgccaactatccctcagttaaaagaacaccttaaagaacattggccaaaatga

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