Pituophis catenifer annectens (San Diego gophersnake): 139313317
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Entry
139313317 CDS
T11059
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139313317 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139313317 (MTREX)
03041 Spliceosome [BR:
pcae03041
]
139313317 (MTREX)
03009 Ribosome biogenesis [BR:
pcae03009
]
139313317 (MTREX)
03016 Transfer RNA biogenesis [BR:
pcae03016
]
139313317 (MTREX)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139313317 (MTREX)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139313317 (MTREX)
Spliceosome [BR:
pcae03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139313317 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
139313317 (MTREX)
Ribosome biogenesis [BR:
pcae03009
]
Eukaryotic type
Pre-60S particles
Helicases
139313317 (MTREX)
Transfer RNA biogenesis [BR:
pcae03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139313317 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
139313317
NCBI-ProteinID:
XP_070794971
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADAFGDELFSVFEDDSASGSGLKETKGTSEAATSNKPGKQRDGKSGAPAKIQAKKKRDA
EFNSADITALGKRPKLDDISTDDLNLADVMPKVKVQAVETIECCTHEVALPADMDFVALK
ARTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRNSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV
IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPT
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVN
TLEQQYNEIEIPNEENVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNED
DDFGWGVVVNFSKKSNVKLNSGELDPLYIAEVLLHCSKESLKNSATEAAKPAKPDEKGEM
QVVPVLVHLLSSISSVRLYIPKDLRPLDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIK
EPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKTQIAVDIKAAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQAT
ALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLSLFRPNL
MDVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgaactgttcagcgtgttcgaagacgattccgcctccggc
tctggcttgaaggaaacgaagggaacatccgaggcggccacttcaaacaagccaggaaaa
caacgagatggcaaatctggggcgcctgcaaaaatccaagccaaaaaaaagcgtgatgca
gaatttaatagtgcagatattacagctttgggaaagagaccaaagttggacgacatctct
acagatgatcttaatttggcagatgtgatgccaaaagtaaaggtacaagctgttgaaact
attgaatgctgtacacatgaggttgctcttcctgcagatatggacttcgtagccctgaag
gcaagaactggaaaagctgcaaaggaatatccattcattcttgatgcttttcaaagagaa
gctattttgtgtgtggataataatcagtctgttttagtatctgctcatacctcagcagga
aaaactgtttgtgcagagtatgccattgctttggctttaagagaaaaacagcgtgtgata
tttaccagtcctattaaagctcttagtaaccaaaaatatcgtgagatgtatgaagaattt
caagatgttggcttgatgactggggatgtcaccatcaatcctacggcatcttgccttgta
atgaccacagagattttgagaagcatgctttacagaggttctgaggttatgcgtgaagtt
gcttgggttatatttgatgagattcattacatgagaaattcagaacgtggtgtggtatgg
gaagaaaccattattttgctccctgataatgttcactatgtgtttctttctgccactatt
ccaaatgcgcgccagtttgctgaatggatatgtcatcttcacaaacagccttgccatgtg
atctacactgattacagaccgactcctttgcaacattatatttttccagcagggggagat
ggacttcaccttgtagttgatgaaaatggtgattttagagaagataattttaatacggcc
atgcaggtacttcgtgatgcaggtgatttagccaaaggagaccagaaaggcaggaaagga
ggaaccaaaggtccctcaaatgtatttaagattgtaaagatgatcatggaaagaaacttc
caaccagtaattatattcagtttcagtaagaaagattgtgaagcctatgcacttcagatg
acaaaactggatttcaacacagatgaagaaaaaaggatggttgaggaagtgtttaacaat
gcaattgattgtttgtctgatgaagacaagaagctcccacaagttgaacatgtgcttcca
cttttaaaacgtggtattggaatccatcatgggggcttacttcctattttgaaggaaacc
atcgaaattcttttctctgaagggctgataaaagcattatttgctacagagacttttgct
atgggaataaacatgccagcaaggacagtgctatttacaagtgcccggaagtatgatggg
aaagatttccgatggatttcctcaggtgaatacattcagatgtctggccgtgctgggcgc
cgaggcatggatgatcgaggaatagtcattttaatggttgatgaaaagatgagtccaaca
attggaaaacagcttctaaagggatctgctgatcctttaaacagtgctttccatttgacc
tacaacatggtactaaatttgctgcgcgtagaagaaattaatccagaatacatgttagaa
aaatctttttatcaattccagcattacagagctattccaggagtagttgaaaaagttaat
actttggaacaacagtataatgaaattgaaattccaaatgaagaaaatgtgatcatctat
tataaaattagacagcaacttgctaaactgggtaaagaaatagaggaatatattcataaa
ccaaagtactgcttgccatttttacaacctggaagactggtaaaagtgaaaaatgaagat
gatgactttggatggggagtggtggttaatttttccaagaaatccaatgtgaagcttaat
tctggtgaactggatcccctctatattgctgaagtcctcctacactgtagtaaagagagc
ctgaaaaattctgcaactgaagctgcaaagcccgcaaaacctgacgaaaaaggggagatg
caggttgttcctgtcctggtgcaccttctgtcatccatcagcagtgttcgactctatata
cccaaagacctgaggcctcttgataatagacagagtgtattgaaatcaatacaggaagtg
cagagacggtttcctgatggagttcctttgctggatcctattgatgacatgggcattaaa
gagccaggtctgaaaaaagtaatccaaaaaatagaagcatttgaacataggatgtattct
cacccacttcacaatgattctaatttggaaactgtatacaaactttgtgaaaggaaaaca
cagattgctgtagacataaaagcagctaaacgggaattgaaaaaagcaaggactgttttg
caaatggatgagctcaaatgtcgtaaacgtgttcttagaagattgggcttcgcaacctct
tcggatgtcatagagatgaaaggacgagttgcttgtgaaatcagcagtgcagatgagctt
ttgctgacagaaatgatgttcaacgggcttttcaatgatttaactgcagaacaagcaact
gctttattaagctgctttgtatttcaagaaaattctagtgaaatgcccaaactaactgaa
cagttagcaggtcctctccgacaaatgcaggaatgtgcaaaaagaattgccaaagtttca
gcagaagctaaattggaagttgatgaggaaaactatctcagtttgttcagaccaaacctg
atggatgtagtatacacatgggccaatggagctacatttgctcatatatgcaaaatgaca
gatgtctttgaaggtagcataattcgatgtatgagaaggctagaagaattgcttagacag
atgtgccaagcagcaaaggctatcggaaatacagaactggaaaacaaatttgcagaagga
attacaaaaatcaagagagacattgtgtttgctgcaagtctttatctataa
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integrated database retrieval system
