Pituophis catenifer annectens (San Diego gophersnake): 139313729
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Entry
139313729 CDS
T11059
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139313729 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pcae01009
]
139313729 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pcae04515
]
139313729 (PCDH1)
Protein phosphatases and associated proteins [BR:
pcae01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139313729 (PCDH1)
Cell adhesion molecules [BR:
pcae04515
]
Cadherins
Protocadherins
139313729 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
139313729
NCBI-ProteinID:
XP_070795270
LinkDB
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Position
Unknown
AA seq
1021 aa
AA seq
DB search
MQQLVSCLGVWFFLQLPNLGFGTRVVYKVQEEQPPNTLIGSLAADYGFPDVGHLYKLEVG
APHLRVDGKTGDIYTTETSIDRESLRECQHLFPGDPCFLEFEVSITDLMNNSPRLLEGQI
EVMDINDNTPNFASPVITLAIPENTNIGSLFPIPLAMDRDAGANGVASYELMPGSDAQKL
FGLQVAEDQDEKQPQLIVMGNLDREQSESYDLTIRVQDGGSPPRASSALLRITILDMNDN
APKFEKPLYEAELSENSPIGHSILQVKANDSDQGANAEIDYSFHQASDVIHRLLRLDRAT
GLITVQGPVDREDINVLKFSVLAKDKGANPKTARAQVVISVRDMNDNAPSIEIRGIGLVT
HQDGIANISEDVPVETPVALVQVSDRDEGENAVVTCVVAGDVPFQLRQASDTGSDSKKKY
FLQTTTPLDYEAVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVNDNDPVFSQSSTEVAFP
ENNSPNDLVVEVSATDADSGSNAKLVYSLAGESLSKDTFSIDPESGEIHVKNVLDREQQE
RYEFLVVATDKGSPSRKGTASIAINVMDRNDNDPKFMLSGYNFSVMENMPPLSPVGMVTV
IDADKGDNAVIRLSVEQDNGDFIIQNGTGTILSSISFDRERQSTYTFRLKAVDGGDPPRS
AYVGVTINVLDENDNAPVIISPSNASYKHILPNTSPGQQVMSVGAEDIDSGINAELLFRI
AGGNPFELFKISSVSGNITLEKEILRKHHGLHRLVVHVNDKGKPSHHGTALVHFYVNETL
ANRTLLETLVGHSLDTPIDIDIAGDPEYERNKQRSNILFGVIAGIVAVTLIILLVVLVRY
CRQKEAKSGYQAGKKETKDLYAPKQSSKGNKAKGKVKKSKSTKPPKPTEDEEETGLQKSL
KFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDL
PATNTFVGTGDSNSTGSEQYSDYSYRTNPQKYTNKQVGEIVLHPPTIPSCYNRAIWTEVW
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagttggtttcttgcttgggtgtgtggtttttcctccagcttcccaaccttggt
tttggaacacgtgttgtctacaaagtacaggaagagcagccacccaatacactcattgga
agtctggcagcagactatggcttcccagatgtaggacatctctataaattagaggtgggt
gccccccatctgcgtgtggatggtaagactggtgatatctataccacagaaacttccatt
gatcgggaaagcctgagggagtgccagcacttgtttccaggagatccttgttttctggag
ttcgaagtttctatcacagacctgatgaacaatagccctcgcctattggaaggacagatt
gaagttatggacatcaatgacaatacacccaactttgcatctcctgtcatcacattagcc
attcctgaaaataccaatattggttcacttttccctattccattggccatggatcgtgat
gctggtgccaatggtgttgcttcctatgaactcatgcctggttcagatgctcagaaactt
tttggcttgcaagtagcagaggatcaagatgagaaacagccacaactaattgtaatggga
aacctagaccgggagcagtcagagtcttatgacttaactatccgggttcaagatgggggt
agcccacctcgtgctagcagcgctttgttgcggatcaccattctggacatgaatgacaat
gcaccaaagtttgagaaaccattgtatgaggctgaactttcagaaaatagtcctattggt
cactctatactgcaggtgaaagccaatgattctgatcagggtgccaatgctgagattgat
tattccttccatcaggcttcagatgtaattcatcggctgctacgcttagacagagccact
ggactcatcacagtacaaggtcctgttgatcgtgaagatattaatgtgctcaagttctca
gtgttggctaaggacaagggagctaaccccaaaactgcccgtgcccaggtagtgatcagt
gtcagggatatgaatgataatgctccatccattgaaattcgtggtattggtttggtgact
catcaggatggcattgccaatatttcagaagatgtgccagttgagacacctgtggctctg
gtacaggtgtctgatcgggatgaaggtgaaaatgctgttgtaacctgtgtggtggctggt
gatgtaccttttcagctgcgacaagccagtgatactggcagcgatagcaaaaagaaatac
tttctacagaccactacaccgttggattatgaagcagtgaaagagtataccattgagatt
gtagctgtggattcaggtaatccacccctatcaagcactaattccctaaaagtgcaggtg
atggatgtcaatgacaatgatccagtgtttagccagagctcaacagaagtggcatttcct
gagaataattccccaaatgacttggtggtagaagtgagtgctactgatgcagatagtgga
tctaatgctaaactggtctactcacttgctggagaatctttatcaaaagacaccttctca
attgatccagaatctggtgaaattcatgtaaaaaatgtgctggaccgggaacagcaagaa
cgctatgaattcttagtagttgcaactgataaaggtagccctagccgcaaaggaactgcc
tcaattgccatcaatgtcatggatcgcaatgataacgatccaaaattcatgctcagcggc
tacaatttttctgtcatggaaaacatgcccccactgagtccagtgggcatggtgacagtt
attgatgcagacaaaggagataatgctgtcattcgactctcagtggaacaggacaatggt
gactttatcatccaaaatggtactggaaccattctctccagtatatcttttgatcgtgaa
cgacagagtacttacactttccggcttaaagctgtggatgggggagacccacctagatct
gcttatgtgggggtgacaatcaatgtattagatgagaatgacaatgctcctgtaattata
tctccatccaatgcttcctataaacatattctgcctaacactagtcctgggcaacaggtt
atgagtgtcggagccgaagacattgattctgggatcaatgctgaattactatttagaatt
gctgggggaaacccctttgaactctttaagatttcatctgtaagtggaaatatcacacta
gaaaaagagattctccgcaagcatcatggacttcaccgcttggttgtacatgtaaatgac
aaagggaaaccttctcaccatggcacagcattagttcatttttatgtgaatgaaacattg
gctaaccggacactgttggagactctagtaggacacagtttggacacacctattgacatt
gacattgctggtgacccagagtatgagcgcaacaagcagcgcagtaatattttgtttgga
gtcattgcaggcatagtggctgtcaccttgataattttgcttgttgtgctggtacgctat
tgccgtcagaaggaggccaaaagtggttatcaagctggcaaaaaggaaactaaggatctg
tatgctcccaaacaaagtagcaaagggaacaaagccaaaggcaaagtgaaaaaaagcaaa
tccactaagccaccaaaaccaactgaagatgaagaagaaacaggtctgcagaaatcactt
aaattcaaccttatgaatgattcagtaagtgacagtccccgcatccatctgcctcttaat
tatccacctggaagccctgacttgggtcgccattaccgttccaattcacctttgccttcc
attcaactgcaaccccaatcaccatctgcctccaagaagcatcaggtagtacaggacctc
ccagccaccaatacatttgtgggcactggggacagcaattctacaggctcggagcagtat
tcagactacagctaccgtaccaaccctcagaaatacaccaataaacaggtaggagagatt
gtgctgcaccctcccaccattccctcatgctacaacagggccatatggacagaagtgtgg
gaatga
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