Pituophis catenifer annectens (San Diego gophersnake): 139313918
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Entry
139313918 CDS
T11059
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcae03036
]
139313918 (HFM1)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
139313918 (HFM1)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Meiosis-specific proteins
Others
139313918 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
AAA_22
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
139313918
NCBI-ProteinID:
XP_070795506
LinkDB
All DBs
Position
Unknown
AA seq
1433 aa
AA seq
DB search
MFLQLTENQISTMTEPAFSLDNLFFEGPGTKQMYLENEEPTNWDLAPVPSVFEIPPTQEL
QMDFAKLNPKESFGKEILINFPEEDDNESVYSTFRKSLFKPASYTYANNASAKIEMDTYC
NIINNKEMKKDLWKNNMQIAKNSDFNCLSINNTFSASANTKEIKKAPSFPCISEISSMEV
ISKNDSVVLRPVTEIPTQFRNIFKEFPYFNFIQSKALDDILYTDRNFVICAPTGSGKTVM
FELAVTRLLIKVPIPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLICKELTGDTAVDD
LFEIQHAHIILTTPEKWDSMTRKWRDNSLVQLVKLILIDEVHVVKDESRGATLEVVVSRM
KTIQSSFSQSSSSVFPMRFVAVSATIPNAEDIAEWLSDGKRPAVCLKIDERHRPVKLHKV
VLGFPCSSNQTEFKFDLTLNYKVASVIQTYSEQKPTLVVCVTISPLTIVIVYFRIIINNG
FSYLQFCATRKGVQQAASVLAKDAKFIMTIEQKQRLQRSANLIKEAKLRDLLICGVAYHH
AGVEVSDRKTIEAAFNMGDIPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFQEYSETD
ILQMIGRAGRPQFDTTATAVIMTRLSTRDKYVHMLNGADTIESSLHKHLIEHLNAEIVLH
TITDVNIALEWVRSTFLYIRALKNPAYYGFSAGLDRNGIEAKLQELCLKNLNDLSSLDLI
KMDDNLYFKTTETGRQMAWYYIAFDTVKKCFMINGTATLSELVVLISGCSEFSDIKLRTN
EKKVLNSLNKDKKWMNIRYPMEGKIKTREMKVNCLIQAQLGCIPIQDFTLTQDIGNIFRN
GIRLTKWLSEFLATHQNNFIVLLNALILAKCFRCRLWENSLYVSKQLEKIGMSLSNAMMN
AGLTSFKKIEDTNARELELILNRHPPFGNQIKESVAHLPKYELNIEQLAKYNEAVAEIIV
TIILTNFEQMQIKRTAPDSHYATLVIGDNDNNVVFRQRIMDSALLKNGNWTKKIEVRRAV
NSDELNINLISSEYVGLDIQQRYKPFYLGPKKVGIMITHGKSDSSQISSIGSSKLRTNKE
VTCSQESLSIKNGNRKCNHHCKNKETCGHDCCKIGVSEKSNMKNESAFSSYLTDLRNRNA
ESVIPPVKRLKMQMSNKSQKVNLKQFSYIPKAFLPGLPRLEHVQHPRSPLLVDNYSSNVC
QTFQPETEVRKMNGFFAIKQSDEKNNLTMSSHESLGESSMSNLTDADKSISLFSETLNVN
FELGNEIWNDYNDGSFVHSNANMQKLKNPESSPLKSRNTCIQNLRKNTSFCQNTQKKPPG
VLFKSYSTDKTKPDICLQNSYSPSLTPPSSSKLHIEYGNKNIFRLQEEYNPAENLKMAQL
ATTSETTLRSYQVAGKGDFFITNRTMTKGADLRHQHDDNGDIKPFLGIFDGLF
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgtttttacagctaactgaaaatcagatttcaacaatgacagaacctgccttttcttta
gataacttattttttgaaggaccaggcacaaagcaaatgtatctagaaaatgaagagcca
acaaactgggatcttgcacctgttccatctgtttttgaaattccacccactcaggagcta
caaatggattttgcaaaacttaacccaaaagagtcctttggaaaagaaatattaattaat
tttccagaagaagatgataatgaaagtgtttactcaacattcaggaaaagcttatttaaa
ccagcttcttatacatatgcaaataatgccagtgcaaagatagaaatggatacatattgc
aatattattaacaacaaagagatgaaaaaagacttatggaaaaataatatgcagatagcc
aaaaattcagattttaattgtctttctataaataatactttttctgcttctgcaaataca
aaagaaattaaaaaagcaccatcatttccatgtatttcagagatctctagtatggaagta
atatctaaaaatgactccgtggttttgaggcctgtgactgaaatccccacacaatttaga
aatattttcaaagagttcccttattttaattttattcagtctaaggctttggatgatatc
ctttacacagacagaaattttgtaatctgcgcaccaactggttctggaaaaactgtgatg
tttgagcttgcagttaccagattattaatcaaagtgccaataccttggttaaatattaaa
attgtatatatggctccaataaaagctctctgcagtcagcgctttgatgattggaaagaa
aaatttggacccattggactcatctgtaaggaactaacaggagacacagcagtggatgac
ttatttgagatacagcatgctcacattattttgaccacgccagaaaagtgggatagcatg
actagaaagtggagagataactctttagttcagctagtgaaacttattctcattgatgag
gtacatgttgtaaaagatgagagccggggtgctactcttgaagttgtggtcagccggatg
aaaactattcagtcttctttctcacagagttctagctcagtatttcccatgagatttgtg
gcagtttctgcaacaattccaaatgcagaagacattgcagaatggctttcagatggcaag
aggcctgctgtatgcctgaaaatagatgaaagacaccgtccagtgaagctgcacaaagtt
gtgcttggatttccctgcagtagcaatcaaactgaattcaaatttgacttaacacttaac
tataaagtagctagtgttattcaaacatattctgaacaaaagccaacacttgtggtatgc
gtgacaatttcccccttaacaattgtcattgtatatttcagaattatcataaacaatgga
ttttcttatttacagttctgtgccacaaggaaaggagttcagcaagctgcttctgtacta
gcaaaagatgctaaatttattatgactatagaacaaaaacaaagattacaaagatctgca
aatttaataaaagaagccaagcttagggatctcctcatttgtggagttgcttatcatcat
gctggagtagaagtgtctgatagaaaaacaattgaagcagcttttaatatgggagacata
ccagttctttttactactagtacacttgccatgggagtaaatttaccagcacacctggta
gttataaaatcaacaatgcattatgctggaggaatgtttcaagagtatagtgaaactgat
attttgcaaatgattgggagagcaggaagacctcaatttgatacaacagcaacagcagtt
atcatgacaagactaagtacaagagacaagtatgttcatatgctaaatggtgcagataca
atagagagcagtttgcacaaacatctaattgaacacttaaatgctgaaatagtgcttcac
accatcactgatgtgaacatagctttagaatgggtgagatcgactttcctctatatcaga
gctttgaagaatccagcttattatgggttttcagctgggctggacagaaatggaattgaa
gcaaaattacaagaactatgtttgaagaatttgaatgatttgtcatcacttgatctgatc
aagatggatgataatctctacttcaagaccacagaaactggacgacagatggcttggtat
tatattgcatttgacactgtaaaaaagtgtttcatgattaacggaacagcaactttatct
gaactggttgtattgatatctggttgcagtgaattttcagacatcaagttaagaacaaat
gagaaaaaagtacttaattccttgaacaaagataagaagtggatgaacataagatatccc
atggaaggaaaaataaaaacaagagaaatgaaagtaaactgtcttattcaggcacaatta
ggatgcattcccatacaagatttcaccttgacgcaagatataggaaacatttttagaaat
ggcataagacttacaaaatggttatctgaatttctggctacccatcaaaacaactttatt
gtattactaaatgctttgattttagcgaagtgtttcagatgtagactttgggaaaattca
ctttatgtatccaaacagctagaaaaaattggtatgagtttatcaaatgcaatgatgaat
gcaggattgacgtcctttaaaaaaatagaagatacaaatgcaagagagcttgaattgatt
ttgaacagacatcctccttttggaaatcagattaaagaatcagtagcacaccttccaaaa
tatgaacttaatatagagcagctggcaaagtacaacgaagcagtagctgaaatcatagtg
acaatcatattaaccaattttgaacagatgcagataaaaagaactgctccagattctcat
tatgcaaccctagtaataggagataatgataataatgtggtttttagacaaaggattatg
gattctgctttgctgaaaaatggaaactggactaaaaaaattgaagtgagaagagctgtt
aattctgatgagcttaatataaatctaatcagttctgaatatgttggattggatattcag
cagagatataaaccattttacttgggaccaaagaaggttggaatcatgatcactcatgga
aaatctgatagctctcagatatcttcaatagggtcatcaaaattaagaacaaataaagaa
gtcacttgtagccaagaatcactaagcataaagaatggaaatagaaaatgcaatcaccac
tgcaaaaataaagaaacatgtggacatgattgttgtaaaattggagtttcagagaaatct
aacatgaagaatgagtcagctttttcttcatatcttactgacttaagaaacaggaatgct
gaatctgtcattcccccagtcaaacgactaaagatgcagatgtcaaataaatctcaaaaa
gtcaatcttaaacaatttagttatattccaaaagcttttcttccaggattgccaagatta
gaacatgtacaacatccaagatcccctttactagtagacaactacagttctaatgtctgt
caaacatttcaaccggaaactgaagttcgcaaaatgaatggtttctttgctatcaagcaa
tctgatgaaaagaataacctgacaatgagctcacatgaaagtcttggagaatcttcaatg
agcaacttgactgatgcagataaaagcatctctttgttttctgaaactttgaatgtaaat
tttgaattaggaaatgaaatttggaatgattataatgatgggagttttgtacacagcaat
gctaatatgcagaagttaaaaaatccagaatcttctcccctgaaatccagaaacacatgc
atccagaatttgagaaaaaatacatcattttgccaaaacactcagaaaaaacctcctggg
gtactttttaaaagttattctacagataaaacaaaacctgatatctgtttacaaaattct
tactctccttcactgactcctccatccagtagcaaactacatatagaatatggaaataaa
aatatttttagacttcaagaagaatataatccagcagaaaatctgaaaatggcacaatta
gctacaacctcagaaacaaccttgagatcttaccaagttgctggaaagggagactttttt
attactaacagaactatgacaaagggagctgatcttaggcatcagcatgatgataatggt
gatattaagccttttcttggcatatttgatggccttttctaa
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