Pituophis catenifer annectens (San Diego gophersnake): 139314250
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Entry
139314250 CDS
T11059
Symbol
DDX20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcae03041
]
139314250 (DDX20)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139314250 (DDX20)
Spliceosome [BR:
pcae03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
139314250 (DDX20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SiaC
AAA_19
AAA_30
Motif
Other DBs
NCBI-GeneID:
139314250
NCBI-ProteinID:
XP_070795924
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MDAQDAVPSMAESWMRTRDVLLPEGPEDFGSLLLSAPVLEGLKAAGFIRPSPVQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSTIALDSLILENSVTQILVLAPTREIAVQIHAVITTIGI
KMEGLECHVFIGGTPVNQDKMRLKKCHIAVGSPGRIKQLIDLDYLNTSSIRLFILDEADK
LLEEGSFQEQVNWIYSSLPANKQMLAVSATYPESLANTLAKYMREPTFVKLNSTDPSLLG
LKQYYKVVNSYPLPHKTFEEKAEHLQELFRKIPFNQALVFSNLHSRAQHLADLLSSKGFP
AECISGSMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMH
RIGRAGRFGTLGLAVTYCCRGEEENMMMKIAQKCNLQLLSLPETLPPELLEHFEGGHVEV
TAVPYPNASPHSCLLPTKRLEGTRQPPTISASTEMIVCDNSPVAKPKQVFKQKKLLKNRT
EHAKTTMNRNKHDNIPLEKHQVESDSEIAVHNNEQVDKESLKNMLPKIPCLSSFKNQDSV
CLWSMVDFIEDYEYFIKEGLERDVEIIRTYVNPRNQDKQLDSLDLVGMESSKYLEATTGT
LAAESDDNDSSCSSESSICSQENQSCIKTSSDMQQRDNSILSTDQTHPQQFSPVLKQKQD
TFLVQKKMKGNVKQSKQIKRDHYHSIHPIKTELIEEASQSKSAPFPHNENLNPDEYWRGY
YRAWRKHYIEASRLYYQKYQRPLNMLTAYHANTIYLEELLKKDR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgcaggatgcggttccttcgatggcggagtcctggatgcgtactcgggatgtc
cttctcccggaagggcctgaagatttcggatcactgcttctttcagctccggttctggaa
gggttgaaagcggcgggctttataaggccttctccggtgcagctcaaagctattccgcta
ggccgttgcggtttagatcttattgtgcaggcaaaatcaggcacaggtaaaacctgtgtg
ttttctactattgcacttgactcgcttatcttggaaaactcagtaacacagattctagtc
ttggcacctacccgagagattgctgtgcagatacatgcagtaattacaactattgggatc
aaaatggaaggcttggaatgtcatgtcttcattggaggaactcctgtaaatcaagataaa
atgagacttaaaaagtgtcatatagctgtaggctcccctggtcgcattaaacaacttata
gatctggactatttgaatacatccagcattcgtcttttcattcttgatgaagcagacaag
cttctggaagaaggcagcttccaggaacaagtaaattggatttattcttctctaccagcc
aataagcagatgttggcagtttcagccacctatcctgaatccttagctaatactttggct
aaatacatgagagagcccacttttgtgaagctgaattctactgacccaagtctccttgga
ttgaagcagtactacaaagttgtgaattcttacccattacctcataagacctttgaggag
aaggctgagcatttacaggagctcttcaggaaaataccgttcaaccaggccttggttttc
tcaaatctacatagccgagctcaacacttggctgatttattgtcatctaaaggttttcct
gctgaatgtatttcaggcagtatgaatcagaaccagcgacttgatgccatggctaagctg
aagcagtttcattgcagagtgttaatttcgacagatttgacttcccgtggaattgatgct
gagaaggtgaatctggttgttaacttagatgtgcctttggattgggaaacatatatgcat
cggattggtagagctggacgctttggaactttaggattagctgtgacatattgctgtcgt
ggagaggaagaaaatatgatgatgaaaattgcacaaaaatgtaatcttcagcttctttct
ttaccagaaactttgccaccagagctgctggaacattttgaaggagggcatgtagaagtc
actgctgtcccatatcccaatgcatctcctcattcatgtctgttgccaactaaaaggcta
gaagggacaaggcaacccccaacaataagtgctagcacagagatgattgtttgtgacaat
tctccggtagccaagccaaaacaagttttcaaacaaaagaagcttcttaaaaatagaaca
gagcatgctaaaacaacaatgaatagaaataaacatgataatatcccactggaaaaacac
caagtggaatctgatagtgaaattgctgtgcacaataacgaacaggtggacaaagaaagt
ttaaagaacatgcttcctaaaatcccttgtctgtcttcttttaagaaccaggattctgtc
tgcttatggagcatggttgattttattgaggattatgaatatttcattaaggaaggattg
gagagagatgtagagattataagaacttacgtaaatcccagaaaccaagataaacagtta
gattctttagatttagtaggaatggaatccagtaaatacttggaagcaacaactgggaca
ttggctgcggaatctgatgataatgatagttcttgtagttctgaatcatccatatgtagc
caagagaatcaatcttgcatcaagacctcttcagatatgcagcaaagagataatagtata
ctgtcaacagaccagacacatcctcagcaattcagtcctgtccttaaacaaaagcaagac
acttttctggtccaaaagaagatgaaagggaatgtgaaacaaagtaaacagatcaagcgt
gaccactatcactccattcaccccatcaagactgaacttatagaagaggcatcccaaagc
aaaagtgctccttttcctcacaatgaaaatttaaatcctgatgaatattggagaggatat
taccgggcatggcggaagcattatattgaagcttctcgtttatactaccaaaaataccag
agaccattaaacatgctgactgcatatcatgccaatacaatctacctggaagagttgtta
aagaaagatagataa
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