Pituophis catenifer annectens (San Diego gophersnake): 139314661
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Entry
139314661 CDS
T11059
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03015
mRNA surveillance pathway
pcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139314661 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
139314661 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139314661 (PABPC1)
03041 Spliceosome [BR:
pcae03041
]
139314661 (PABPC1)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139314661 (PABPC1)
mRNA cycle factors
Stress granule specific factors
139314661 (PABPC1)
Spliceosome [BR:
pcae03041
]
Complex C
Other components
Complex C specific factors
139314661 (PABPC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_ACIN1
RRM_10
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
139314661
NCBI-ProteinID:
XP_070796513
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTSQITQLRPSPRWTAQGARPHPAFQNMPGAIRPTAPRPPFSTMRPASQVTRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPAGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagctacccgatggcctcgctctacgtgggcgacctgcacccc
gatgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccggcgctcgctaggctacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttagataccatgaattttgacgtcattaaaggcaag
ccagtgcgtatcatgtggtctcaacgtgatccatctcttcgaaaaagtggtgttggcaac
attttcattaaaaacttggataaatcaattgataataaagctttgtatgatacattttca
gctttcggaaacatcctctcttgtaaggtcgtgtgtgatgagaatggctccaaaggctat
gggtttgtacattttgaaacacaagaagctgcagaaagagctattgaaaaaatgaacgga
atgctgcttaacgatcgtaaagtatttgttggaaggtttaaatcacgcaaagaacgggaa
gcagagcttggagctcgtgctaaggagttcactaatgtttacatcaagaattttggagaa
gacatggatgatgagagactgaaagaactctttggcaagtttggacctgccttgagcgtg
aaagttatgactgatgaaagtggaaaatccaaaggctttggctttgtcagttttgagaga
catgaggatgcccaaaaagctgtagatgagatgaatggaaaggaactcaatgggaagcaa
atatatgttggacgagctcagaaaaaagttgaaagacaaacagagcttaaacgcaaattt
gaacaaatgaagcaggataggattacaagataccagggtgtaaatctatatgtgaaaaat
ttagatgatggaattgatgatgaacgtctgcgcaaagaattttcaccatttggcacaata
actagtgcaaaggtcatgatggaaggaggccgcagtaaaggatttgggtttgtctgcttt
tcttcaccggaagaagcaaccaaagcagtaacagaaatgaatggtagaattgtggccacc
aaaccactatatgtggctttagctcaacgtaaagaggaacgccaggctcacctcaccaac
caatatatgcagagaatggcaagtgtgagagcagtgcccaatcctgtcatcaacccttac
caaccagcacctccttcaggttatttcatggcagctatcccgcagacacaaaaccgtgca
gcctactatcctactagccagattactcaacttagaccaagtcctcgctggactgctcag
ggtgccagacctcatccagctttccagaatatgccaggtgccatccgccctacagctccc
agaccaccatttagtaccatgaggccagcttcacaagttacacgagtcatgtcaacacag
cgtgttgcaaacacatcaacacagactatgggtccacgtccagcagcagcagccgctgca
gccactccagctgtacgcactgtcccacagtataagtatgctgcgggggttcgcaatcct
cagcagcatcttaacacacagcctcaggttgctatgcagcagcctgctgtccatgtacaa
ggtcaggaaccattgactgcttccatgttggcttctgcccctccacaagaacaaaagcag
atgttgggagaacgtctgttccctcttatccaagccatgcatcctactttggcgggtaaa
ataactggtatgttgctagaaattgacaactccgaacttcttcacatgcttgagtctcct
gaatcccttcgttcgaaggttgatgaagctgtagccgtactgcaagcccatcaagctaaa
gaagctgctcagaaagcagttaacaatccagcaggagttccaagtgtctaa
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integrated database retrieval system
