Pituophis catenifer annectens (San Diego gophersnake): 139314747
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Entry
139314747 CDS
T11059
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
pcae04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
139314747 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
139314747 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcae02000
]
139314747 (NPC1)
Transporters [BR:
pcae02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
139314747 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
PRIMA1
IMS_HHH_1
Folate_rec
Motif
Other DBs
NCBI-GeneID:
139314747
NCBI-ProteinID:
XP_070796687
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
MRHQLKLRGHSCGRLCGLGISVVFLLALLPGRAFSDSCIWYSQCGIASGDKRYNCQYNGS
AIPLPKEGYDLVQELCPGFFFENVSLCCDVQQLQILKSSLELPLQFLSRCPSCFHNFINL
FCELTCSPHQSEFLNITQTQPYNDPVTKEKKTSIVELQCYIGKKFANDMYNACKDVEAPS
SNIKALGLLCGKDIKDCNATNWIQYMFSKDNGQIPFNIIPIFSDVPVHGMIPMNNATKGC
NESVDDTTGPCSCQDCSIVCGPKPVPPPPPAPWLLLGLDAMCVIMWITYTAFLLIFFAVV
CGVWCYRKRYFVSEYTPIDGNIAYSVNSHQNTGEATWCERFGEKFENALRVTFTSWGAFC
VRNPRPVILFSLVIIVMCSSGLAFFKITTNPVDLWSAPNSQARREKEYFDTNFGPFFRTE
QLIIQAVNTTPEIYSPFLPGPDVPFGPPLTKHILHQILDLQNGIENITASYQNETVMLKD
ICLAPLAPYNNNCTILSVLNYFQNSHSLLDAHVADEFYTYADFHSHFLYCVRAPASLNDT
SLLHTPCLGTFGGPVFPWLVMGGYDNENYNNATALVITFPVINYYNDTEKIMKVLAWEKE
FINFVKNYDNPNLTISFSAERSIEDEINRESNSDVHTVVISYVVMFVYISLALGHIKSAA
RFLVDSKISLGIAGILIVLSSVACSLGIFSYFGVPLTLIVIEVIPFLVLAVGVDNIFIIV
QTFQRDERLQDETLDKQIGRILGEVAPSMFLSSFSETVAFFLGSLSTMPAVRSFSLFAAV
AVFIDFLLQITFFVSLLGLDIKRQESNRCDVLCCIKGREEISSSHHSKSMLFQFFKNIYS
PFLLKDWMRPIIISIFVGVLSFSIAVVNKVEIGLDQRLSMPDDSYLIVYFNDLGKYLHAG
PPVYFVLKEGHNYTTPDGQNMVCGGMGCDNNSLVQQVFEAAEISSYTRISYAPSSWIDDY
FDWIKPQSSCCRTYNTTGAFCNASVVNPSCVRCRPLTKEGKQRPEGEDFMKFLPMFLSDN
PNPKCGKGGHAAYSSAVNFIHNSSEIGATYFMTYHTVLKTSADFIDALKKARIIAYNITE
AMVHKVKNAEVFPYSIFYVFYEQYLTIVDDTIFNLGVSLGSIFIVTMVLLGFEIWAAIIV
SFTIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHVTRAFTISTKATRVERA
EEALSQMGSCVFSGITLTKFGGIVVLAFSKSQIFQIFYFRMYLTMVLLGATHGLIFLPVL
LSYIGPSINKAKVRAAQERNKGTEREKLLFF
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgcgccatcaacttaagctacggggccacagctgtgggaggctctgcggcctgggtatc
tctgtcgtctttttactggcccttctgcccggccgggcattctcagattcttgtatatgg
tacagccaatgtgggattgcgtctggagacaaaaggtataattgtcaatataatggttca
gcaataccactaccaaaggaagggtatgatttagttcaggaactctgtccaggttttttc
tttgagaatgttagcctttgctgtgacgtacagcaacttcagattttgaaaagtagcctg
gaactacctttacagtttctttccaggtgtccttcatgctttcataatttcataaatctc
ttttgtgagttaacgtgtagccctcatcagtctgaatttctgaatattactcaaacacag
ccgtataacgatccagtaacaaaagagaaaaaaaccagcatcgtagagctgcaatgttat
attggaaaaaaatttgctaatgatatgtataatgcctgcaaagatgtggaggctccatca
agcaatattaaggcattaggtctgttgtgtgggaaagatattaaagattgtaatgcaacc
aattggattcaatatatgtttagcaaagataatggccagattcccttcaatattattcca
atattttcagatgtacctgtccatgggatgattcctatgaacaatgctaccaaaggctgc
aatgagtcagtggatgataccacaggaccttgtagttgtcaggattgttccattgtctgt
ggcccaaaaccagtaccaccaccacctcctgccccttggcttttgcttggtttggatgcc
atgtgtgttattatgtggatcacctacacagcatttcttcttattttctttgcagtggtc
tgtggtgtctggtgttacaggaagagatattttgtttctgaatatacacccattgatggc
aatattgcatattctgttaactcacatcaaaatactggagaagctacttggtgtgaaaga
tttggtgagaaatttgagaatgctttaagagttacatttacgtcatggggagctttttgc
gttcggaatccacgacctgttattctgttctccttggttatcattgtcatgtgttcctca
ggcttggcatttttcaaaataactacaaatcctgtagatctgtggtcagccccaaatagc
caagctcggagagagaaggaatactttgatactaattttggacctttcttccgtactgaa
caactcattattcaggcagtgaatactactccagagatctattcaccatttcttccggga
ccagatgttccttttggacctccacttacaaaacatatcttgcatcagatactagatttg
caaaatggtattgaaaatataactgcatcttatcaaaatgaaactgtaatgttgaaggac
atttgcctggcacctcttgctccctacaataacaactgtactattctgagcgttctcaac
tacttccagaacagtcattctctcctagatgctcacgttgctgatgaattctatacttat
gccgacttccactctcacttcttatactgtgtcagggctccagcatctctgaatgacaca
agcctccttcacacaccttgcttggggacattcggtggtcctgtcttcccatggctggtg
atgggaggatatgacaatgaaaattataataatgccacagcacttgtgatcacatttcct
gtcatcaattactacaatgacacagaaaagattatgaaagttttggcttgggaaaaggag
tttatcaattttgtgaaaaactatgacaacccaaatttaacaatttccttctctgctgaa
cgtagtattgaagatgaaataaatcgagaaagcaacagtgatgttcacactgttgtaatt
agctatgtagtcatgtttgtatacatttccctggctcttgggcatattaagagtgctgct
agattcttggtggattcaaagatctcattgggcattgcaggcatcctgatagtgctaagt
tcagttgcatgttctttgggtatcttcagctattttggagtccctctaacactaattgtt
attgaagtcattccctttttggtgttggctgttggagtggataacattttcattattgtt
cagacatttcagagagatgaacggcttcaagatgaaaccttagataagcagattggtcga
atccttggagaggtggctcctagcatgtttctttcctcattttcagagacagtggctttt
ttcttagggagcttgtctactatgcctgcagttcgttcattctccctctttgctgctgtg
gctgtgtttattgatttccttctgcagattaccttctttgtaagtctcttgggcttggat
attaagcgccaagagagtaatcgatgtgatgtcctgtgctgtatcaaaggtcgtgaagaa
atcagtagctcccatcactctaaaagcatgttgtttcaatttttcaaaaacatttattct
ccgtttcttcttaaagattggatgagaccaattattatatccatatttgtgggtgtgtta
tcattcagcatagcagttgttaataaagttgagattggcctggaccagagattatcaatg
ccggacgattcctatttgatagtctacttcaacgatcttggcaaatacctgcatgcaggt
cctccagtatattttgtgttgaaagaagggcataattatacaacgccagatggacaaaat
atggtttgtggaggaatgggatgtgacaacaattctctggtacagcaagtgtttgaagca
gcagagattagcagctatacaagaattagctatgcaccttcttcctggattgatgactac
tttgattggatcaaaccacaatcttcctgttgcagaacttataacaccactggagcattc
tgcaatgcttcagttgtcaatccatcatgtgtgcgctgccggccactgactaaagaagga
aaacagagacctgagggtgaagacttcatgaaatttctccctatgttcctctcagataat
cctaatccgaaatgtggcaagggaggacacgctgcatatagttctgcagtcaactttata
cacaactcttctgaaattggagccacttacttcatgacttaccatacggtgctaaaaacc
tcagcagactttattgatgcattgaaaaaagcacgaattatagcatacaatattactgaa
gccatggtccacaaagtaaaaaatgccgaagtttttccttacagcatattctatgttttt
tatgaacaatatttaacaattgtggatgacaccatctttaatcttggcgtttcccttgga
tcaatattcatagtaactatggtgctgcttggttttgaaatatgggctgccattattgtt
tccttcactattgctatgatactggtcaacatgtttggagtgatgtggctctggggtatc
agcttaaatgcagtttccttagtaaaccttgtaatgagttgtggcatctctgttgagttt
tgtagtcatgtgacaagagcatttacaattagtacaaaagcaacaagagtagagcgtgct
gaggaagcactatcccaaatggggagctgtgttttcagtggtattacactcacaaaattt
ggaggaatagtggtgcttgctttttccaaatctcagattttccagatcttctacttcagg
atgtatttaaccatggtgctacttggagcaacccatggtctaatatttcttcctgtccta
cttagctacatagggccctcaataaacaaagctaaagttcgtgcagcacaagaaaggaac
aaaggtacagaaagagaaaaactcctgttcttctag
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