Pituophis catenifer annectens (San Diego gophersnake): 139314936
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Entry
139314936 CDS
T11059
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139314936 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139314936 (SMG7)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139314936 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
139314936 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
139314936
NCBI-ProteinID:
XP_070797052
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEAWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KIQWGISDFIKAFIKFHGHVYLSKNLEKLNPLREKLEEQFKRLLFQKTFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDYQEESWGSYP
LPALKVSMDWLKLRPSIFQETVVDERQYVWPWLISLLNSFQPHEEDLSCPNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQHRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLMFLTEIPELLLEEHNESKQSHVLQEASEPQFVDGSPGLKSVLSTSRNLSSSSDTGDK
PMVTFKENIKPREINREQGRNYLTKEVGRERRDYNKGITANKNDGKKDINNKRKNEIKKC
GMDKSQETGKQNVAVQVKSQTELRKTPVSEVRKTPVTQSPNQASNSQFIPIHHPGAFPPL
PSRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGTFLQPAAHSPAGNQVQAGKQSHIPY
SQQRPSGPGPMNQGPQQTPSPSQQPLASIPAQATTPSASQLQVQALAQQQQQQQSPTKAV
QALGKSPPHHSGFQQYPQGDSSKQLWNPSQVQGPLGKIMPVKQPYYLQGQDPVKLFEHSL
QPPLLQQQQPLEKKMKPFPMEPYNQNPSEVKMPEFYWDSYGMADNRVVMAQQQANLDRRG
KRQQGVFRPEQDPMPRMGFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGP
LASLPGRSLFKSLLEKPSDLMSQSPSFLSLTGFSLNQERYPNSMFNEVYGKNLNASTKAE
VTPSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVP
FSNFGPIGTPDNRDRRITDRWKTDKPAMGGFGLDYLPATSSSSESSWHPTSTHSGPWSAH
GPSIEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctttgcgctcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggaccagccgaagcctggacatctcgacaagctttacaggacttatac
cagaaaatgttagtaacagatttggagtatgcattggataaaaaagtggaacaggatctg
tggaatcatgcctttaagaatcagatcacaactctacagggtcaagcaaaaaaccgagca
aatccaaaccggagtgaagttcaagcaaacctctctctatttctagaagcagctagtggc
ttctatacgcagctactgcaggagctgtgcacggtatttaatgtggatttgccctgccgt
gtgaagtcctctcagttgggaattatcagcaataaacagacgcacaccagcgccatagtg
aagccacaatctagctcctgctcatatatatgccagcactgccttgtccaccttggagac
attgctcgctacagaaatcagaccagccaggctgaatcctattataggcatgcagctcag
cttgtcccctccaatggtcagccttataatcagctggctattttagcatcctccaaagga
gatcacctgaccacaattttctactactgcagaagcattgctgtgaaattccctttccca
gctgcttctactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aaaattcagtggggaatatctgatttcattaaggcatttataaaattccatggccatgta
tatctgagtaagaatttggagaaattgaatcctcttcgtgagaaattagaagagcaattc
aagaggttgctgttccaaaagaccttcaattctcaacagcttgtccatattactgtcatc
aacctgtttcagttgcaccatttacgggactttagcaatgagactgaacagcatagttac
agtcaggatgaacagctatgctggacacaattactggcactcttcatgtcttttcttgga
attttgtgcaagtgcccacttcagaatgattaccaagaagaatcttggggttcttatccc
cttcctgcactcaaagtctcaatggactggctgaaactgagacccagtatttttcaggag
actgtggttgatgaaaggcaatatgtttggccttggctgatttctcttctaaacagtttt
cagcctcatgaagaagacctctcctgccctaatgccacccctcttccagaagagtttgag
ctgcagggattcttggctctgaggccctcattcaggaacttggatttctctaaaggccat
caggggattactggagacaaagaaggacagcatcgccgtatacggcaacaacgcctgatc
ttcacaggaaagtggattgctgacaatcagccaaggttgatccaatgtgaaaatgaggtt
ggcaaactcatgtttttgacagagatcccagaactgttattggaggaacataatgaatcc
aaacagagtcatgttctgcaggaagcatcagagccacagtttgtagatgggagcccagga
cttaagtccgtgctatctacaagtcgaaacctgagcagcagctctgatacaggagataag
ccaatggtgacattcaaagaaaacattaaaccacgagaaataaacagagagcaaggccga
aactatctgaccaaggaagtaggaagagaaagaagagattataacaaaggaataacagcc
aataaaaatgatggaaagaaggacatcaacaataaaaggaagaatgagattaagaaatgt
ggcatggacaagagtcaagaaacggggaagcagaatgtagcagtacaggtaaaatcccag
actgagttgaggaagactccagtatctgaagtcagaaaaacaccagtaactcagtctcca
aaccaggccagcaactcccagttcatccccatccatcacccaggagctttccctcctctt
cctagccggccaggcttcccacctcctgcctatgttattcctcctcctgtggctttctct
atgagctcaggatatactttcccaggtggtgtttctgtcccaggaacctttcttcagcct
gcagctcattcacctgcaggaaatcaggtgcaagctgggaagcaatcccacattccttac
agccagcagcggccctctggaccaggcccaatgaaccagggacctcaacagactccatcc
ccttctcagcagccccttgcatccataccagctcaggcaacaaccccgtctgcaagccag
ctacaggtccaggctcttgcccagcagcagcagcagcaacagtccccaacaaaagctgtg
caggcattagggaagagtcctccacaccactctggattccagcagtatccccagggagac
tcctccaagcagctctggaacccctctcaggttcaaggcccattggggaagatcatgcct
gtgaagcagccgtactatcttcagggccaggatcccgtgaaactctttgaacactccttg
cagcctccccttctgcaacaacagcagcctctggagaagaaaatgaagcctttccctatg
gagccatataaccagaatccctcagaggtcaagatgccagaattttactgggactcctat
ggtatggctgataaccgtgttgtgatggcacaacaacaagccaacctggaccgcagaggg
aaacggcagcaaggagtcttccgcccagagcaggacccaatgccgaggatgggttttgag
gaccccaagagctcccctctgcttcctccggacctgttaaagagtttggctgccttggag
gaggaggaagagctgattttctctaatcctcctgatctttacccagcactgctggggcct
ctcgcctctcttcctggacgaagcctctttaaatcactgttggagaaaccatcagatctg
atgtcacagtcaccatctttcctatcgctcacaggcttctctcttaatcaggaaagatat
ccaaacagcatgttcaatgaagtttatgggaaaaacctcaatgccagcacaaaagccgag
gttacaccatcagtagctcaccaggagacttcactttattctctttttgaaggtactcca
tggtctccatctcttccagccagctcagatcattcaacaccagccagccagtctcctcac
tcctccaacccaagcagcttgccaagctctcctccaactcacaaccataattcggttcca
ttttccaactttgggcccattgggactccagacaacagggatagaaggataacagatcgg
tggaagacagataaaccagcaatgggaggctttggcctggactatctcccagcaacatca
tcctcttcagagagtagctggcatccaaccagcacccacagtggtccctggtcagcccat
ggcccatccatagaggattcatcagctgtgcttatggaaagtctgaagtctatctggtcc
agttctatgatgcatcctggaccttctgctctggagcaactgttgatgcagcagaagcaa
aagcagcaacgtgggcaaggtgccatgaatccaccacactga
DBGET
integrated database retrieval system
