Pituophis catenifer annectens (San Diego gophersnake): 139315043
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Entry
139315043 CDS
T11059
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139315043 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcae00536
]
139315043 (COL11A1)
Glycosaminoglycan binding proteins [BR:
pcae00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139315043 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
139315043
NCBI-ProteinID:
XP_070797168
LinkDB
All DBs
Position
Unknown
AA seq
1963 aa
AA seq
DB search
MLGPSFPPKRVQFGDPNFKETVLKWYGEAESDLSEVESDCDENFVMDDEEPTAAAESDIS
DGEAPNEIDDQLPLSSRWVPKGVEAERLLEYKRDRSGRVGRAGRREKRCGRSGGPGEGGW
VAVGAPGVWANHGEESAVVHQVENETAVLGLGFPRSSRLGGASAPSCGSPRRTINILNSF
FSPYVSAEPVDVLKALEFHKSPEGISKTSGICINRKNSKGSDVAYRVSKSAQLSAPTKQL
YPGGKFPEDFSVLFTIKPKKGVQSFLLSIYNEHGIQQVGIEVGRSPIFLFEDQNGKPAPE
DYPIFGTVNIADGKWHRVAISVERKSVTMIVDCKKKTTKPLERSSPAVVDTNGITVFGTR
ILDEEVFEGDIQQMLIVGDPRAAYDYCEHYSPDCDSPVPNAPQAQEPQVDEYATEDLIEY
DYDYGDPDYKDYKDYKDLETVTEGPPLYDETVAYTEANVVDEYHEYNVAEVDYGTEAYQT
VIPTQTTGRNEQIPVEEVFTEDYVTGEDYNSKTKNNEETDYGNRGVDHSEAEVVVDGDLG
EYDFYEYKEYEEKPTSPTNEEFGPGVPAETDITETTVNGHHAYGEKGQKGEAAVIEPGML
IEGPPGPPGPPGLSGPSGMQGPIGPPGDPGDRGPPGRSGLPGADGLPGPPGTMLMLPFRF
SGGGEKGPAISPQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGSPGSSGIKGDGGDPG
PQGPRGVQGPPGLPGKSGKRGRPGADGARGIPGETGSKGDRGFDGLPGLPGEKGHRGDRG
PQGPPGSPGEDGMRGEDGEVGPRGLPGESGPRGLLGPRGTPGLPGQPGIPGVDGPPGPKG
NLGPQGEPGPHGQQGIPGPQGLPGPQGPIGVPGEKGPQGKPGLAGLPGTDGPAGHPGKEG
QTGEKGDTGPAGPHGPVGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFKGDMGLKGDRG
EVGSLGPRGEDGPEGPKGRAGPTGDSGGPGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPG
FSGSNGEKGGRGLHGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTAGGDGPPGPSGERG
PQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETG
PIGERGHPGPPGPPGEQGLPGAGGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQG
GAGLKGGEGPQGPPGPIGSSGERGPAGTAGPIGLPGRPGPQGPPGPAGEKGGPGEKGPQG
PAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPSGPPGLQGPIG
APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMG
PPGPPGPRGPQGPSGSDGPQGPSGSAGSVGGVGQKGEPGEAGNPGPPGEGGTTGPKGERG
EKGESGPPGAAGPPGLKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGTDGTGGEKGDDG
DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGSEGAPGKTGPVGPQG
PAGKSGPEGLRGIPGPVGEQGLPGVPGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG
LIGPPGEQGEKGDRGLPGTQGSTGSKGDSGIPGPAGPLGPPGPPGLPGPQGPKGSKGSSG
PGGEKGDSGLPGAPGPPGPPGEVIQPLPIQASKKSKRSIDAKLSVAEDYTDGMEEIFGSL
SSLKQDIEHMKYPIGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGCTGDSFKVYCNFTA
DGETCIYPDKKSEGFRISSWPKENPGTWFSEFKRGKLLSYVDAEGNSISMVQMTFLKLLS
ASARQNFTYNCHQSVAWHDVSSDSYDKALRFLGSNDEEMSYDNNPYIKVLHDGCASRKGY
AKTVMEINTPKIDQLPIFDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atgttgggaccaagttttccgccaaaaagagtgcaatttggtgatccaaacttcaaagaa
actgttctaaaatggtatggagaagcagagagtgatctgagtgaagtggaatcagactgt
gatgaaaattttgtaatggacgatgaggaacccaccgccgccgctgagtctgacatcagc
gatggtgaagctcccaatgaaattgatgaccagttgcccttgagctctcgatgggtccct
aaaggagtcgaggccgagcgtctcttggagtacaagcgggacagaagcggccgcgtcggg
cgagccgggcggagagagaagcggtgcgggcgaagtgggggccccggcgagggtgggtgg
gtcgccgttggcgcgcccggtgtttgggcgaaccatggagaggagtcggcagtggtccac
caggtggaaaacgaaacggcggttctgggactcggctttccccgctcttctcgtctcggc
ggcgcttctgctccaagctgcggaagtccgaggagaactataaatattctaaattctttt
ttttccccttatgtttcagctgaaccagttgatgtactcaaagcattagaatttcataaa
tctccagaaggaatatcaaaaacatcaggaatttgcataaacagaaagaattccaaagga
tcagatgttgcctacagagtttcaaaaagtgcacaactcagtgccccaactaaacaattg
tacccaggtggaaaatttcctgaagacttttcagttctatttacaataaaacctaaaaaa
ggagttcagtcctttcttctatctatctacaatgaacacggcattcagcaggttggcatt
gaggtgggcaggtcgcctatcttcttgtttgaagatcaaaatggaaaacctgccccagaa
gactatcccatctttggtacagtcaatattgctgatggaaagtggcatcgggtggccatc
agtgtggagaggaaatcagttaccatgattgtggactgtaagaagaaaaccacaaaacca
cttgagagaagcagtccggcagtcgttgacaccaatggcattactgtctttggaacacga
attctggatgaggaggtgtttgagggtgatatccagcagatgctgatcgttggtgatccc
agagcagcatatgattactgtgagcactacagcccagactgcgattctcctgtgcccaat
gctccccaggctcaagaacctcaagtggatgaatatgcaaccgaagatttaatcgaatat
gactatgactatggggatccagattataaagattataaagattataaagaccttgaaact
gtaacagagggacccccactatacgacgagactgtagcatatactgaggccaatgttgtt
gacgaatatcatgagtataatgtggctgaagttgactatggaactgaagcttaccagact
gtgattcctactcaaacaactggacgaaatgagcaaattcctgttgaagaagtatttact
gaagactacgtaacgggagaggattataattcaaagactaaaaataatgaggaaacagat
tatggaaacagaggagtagaccacagcgaagctgaagttgtggtagatggagatttaggc
gaatatgatttttatgaatataaagaatatgaagagaaaccaaccagtcctactaatgag
gagtttgggcctggagttcctgcagagactgatatcacagaaacaaccgtgaatggccat
catgcatatggagaaaaaggacagaaaggagaagcagctgtcattgaaccaggaatgctt
attgaaggacctccaggacctccaggaccgcccggtctttcgggcccctctggtatgcaa
ggccccattggtcctcctggtgatcccggtgataggggtccaccaggacgttctggtctt
ccaggggctgatgggttacctggacccccgggtaccatgttaatgttaccattccgcttt
agtgggggtggtgagaagggcccagcaatctcacctcaggaggctcaagctcaagctatt
cttcagcaagccagaattgcaatgagaggcccccctggtccaatgggacttactggaaga
cctggtcctgtgggaagtcctggctcatctggtatcaaaggtgatggtggagatccagga
cctcagggtcctcgaggcgttcaaggtccacctggtctgcctggaaaatctggtaaaaga
ggtcgtcctggtgcagatggagcaagaggaattccaggagagacaggttctaagggtgac
cgaggttttgatgggcttcctggactaccaggtgaaaaaggacacaggggagatcgtgga
ccacaagggcctcctggatctcctggggaagatggaatgaggggagaagatggtgaggtt
ggaccaagaggccttccaggtgaatctggtccaagagggttattggggcccagaggaact
ccaggactaccaggacaacctggaatcccaggtgttgatggaccaccaggcccaaaagga
aacctgggtccacaaggggaaccaggaccacatgggcagcaaggtattccaggtccacag
ggactcccaggtccacaaggtccaattggcgttccaggtgaaaaaggtcctcagggcaaa
cctggtctggcaggacttcctggtactgatggccctgctggccatccagggaaagaaggg
cagactggagagaaaggtgacacggggcctgcaggtcctcatggaccagttggctatcct
ggtccccgtggtgtaaagggtgctgatggcgtccgagggctaaagggtggcaaaggtgaa
aagggtgaagatggcttccctggatttaaaggtgatatgggccttaagggcgatagaggt
gaagttggttctcttggtccccgaggagaagatggccctgaaggtcccaaaggtcgtgca
ggtcccacaggagactcaggtggccctggccaagctggagaaaagggtaaacttggtgtt
cccggtttgccaggatatccaggaagacaaggccctaagggatctactgggtttcctgga
ttttcaggttctaatggagagaaaggaggaaggggattacatggcaaaccaggtccaaga
ggacaaagaggaccaacaggaccacgtggatcaagaggtgcaagaggtccaactggaaaa
cccggaccaaagggcactgctgggggtgatggcccacctggcccgtctggtgaaagggga
ccacaagggccccagggacctgttggatttccaggacctaagggacctcctggaccacct
gggaaggatggcttgcctgggcacccaggacaacggggtgaaacgggttttcaagggaaa
acagggccacctggccctggcggtgttgttggaccccagggtccaactggggagacgggt
ccaattggtgaaagaggtcaccctggacctccagggccaccgggtgaacaaggacttcct
ggtgctggagggaaagaaggcgctaagggtgatccaggtcctcaaggcatttctgggaaa
gatgggcctgcaggactgcggggtttcccaggagaaagaggcttgccaggagctcagggt
ggagcaggtctgaaaggcggtgaaggtcctcaaggcccacctggtccaattggttcttct
ggtgaacgtggcccagcaggcacagcagggccaattggtttaccaggacgtcctggacca
caaggtcccccaggccctgcaggagaaaaaggaggtccgggtgaaaaaggtcctcaggga
ccagccggacgtgatggaatacagggacctgtgggtcttcctggccctgcaggaccagct
ggttctcctggagaagatggtgacaagggtgaaattggagaaccaggtcaaaaagggagt
aaaggtgacaaaggagaaaatggaccttcaggaccacctggtcttcagggtcctattggt
gctcctggaattgctggaggtgatggggagcctggtccaagaggacaacaagggatgttt
ggacagaaaggagatgaaggtgcacgtggctttcctggtcctccaggacctattggcctt
cagggtcttcctgggcccccaggtgaaaaaggtgaaaatggcgatgttggtccaatgggt
cctccaggtccccctggccctagaggccctcaaggtccaagcggatcagatggtcctcaa
ggtccatcaggttcagctggctctgttggaggagttggtcagaagggtgagcctggagaa
gctggaaatcctgggcctcctggagaaggtggcacaactggtccaaaaggcgaaagaggt
gaaaaaggtgaatctgggccacctggagcagcaggacctcctggacttaaaggacctcca
ggtgatgatggtccaaagggaaatccaggccctgttgggtttcccggtgatcctggacct
cctggagaacctggtccagctggaactgatggcacaggaggggaaaagggtgatgatggc
gatccaggccagcctgggccaccaggtccttctggtgaagcaggtccccctggccctcct
ggaaagagagggcctcctggagcagctggtgcagaaggaagacaaggtgaaaaaggagca
aagggtgaggctggatcagagggtgctccgggaaaaactggcccagttggtcctcaaggt
cctgcaggaaaatctggcccagaaggacttaggggtattcctggccctgtgggagaacaa
ggtttacctggagtacctggtcaagatggcccaccaggtcccatgggtccacccggcttg
ccaggattgaaaggggatccaggttcgaaaggagaaaagggacatcctggattgattggt
ttgattggacctccaggagaacaaggagaaaagggagacaggggtctgcctggtacacag
ggatctacaggatcaaaaggagattcgggaattcctggaccagctggcccacttggacct
ccaggccctcctggtttacctggtcctcaaggccccaaaggttctaaaggttcatcgggt
cctggtggcgagaaaggtgatagtggtttacctggtgctcccggccctcctggacctcca
ggtgaggttattcaaccgttgccaatccaggcctccaaaaagtccaagagatccatagat
gccaagctatctgttgcagaagattacactgatggaatggaagagatctttggctcgctg
agttctttgaaacaagatattgaacatatgaaatacccaataggcactcagaacaaccca
gctcgaacctgcaaggatcttcagctctgtcacccagattttccagatggagagtattgg
attgatcctaaccaggggtgtactggggactctttcaaagtatattgtaacttcacagct
gatggggaaacctgcatctatccagataagaaatcagagggatttaggatttcatcatgg
ccaaaggaaaatccaggaacatggtttagtgaatttaagagaggcaaactgctttcttat
gtggacgctgaaggcaattctattagcatggtccaaatgacattccttaaactgctaagt
gcctctgctcgacaaaacttcacttacaactgtcatcagtcagtagcctggcatgacgtc
tcttctgacagctatgacaaagcattgaggttcttagggtcaaacgatgaagagatgtct
tatgacaacaatccgtacatcaaagtgcttcatgatggctgtgcatcaagaaaaggctat
gcaaagactgttatggaaatcaatactcccaaaattgaccaactgcctatcttcgatgtg
atgattaatgactttggtgatcaaaatcagaagtttggctttgaagtgggtccagtctgt
ttccttggttaa
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