Pituophis catenifer annectens (San Diego gophersnake): 139316120
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Entry
139316120 CDS
T11059
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcae03009
]
139316120 (LTN1)
04121 Ubiquitin system [BR:
pcae04121
]
139316120 (LTN1)
Enzymes [BR:
pcae01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139316120 (LTN1)
Ribosome biogenesis [BR:
pcae03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
139316120 (LTN1)
Ubiquitin system [BR:
pcae04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139316120 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
zf-ANAPC11
HEAT_GCN1
FANCL_C
zf-rbx1
RINGv
TPR_CcmH_CycH
zf-RING-like
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
139316120
NCBI-ProteinID:
XP_070798735
LinkDB
All DBs
Position
Unknown
AA seq
1759 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRTAELLAKEQGTVPGFVGFGTSSSDLGYVPAVQGAEEIDSL
IDADFRMVLRKLSKRDVTTKLKAMQEFGAMCKERETEIVKGVLPYWPRIYCKISLDHDRR
VREATQQAFEQLILKVRKHLAPHLKNIMGYWLIAQCDIYSPAASAAKEAFEKAFPPSKQP
EALMFCKDEILNVLQDNLLKETPDTLSDPQAVPEEEREAKFHRIITSSLLSLKKLLCMMP
DNEIKSLEERLKTLLSQNKFWKYGKHNIAQVRSAFFEVITTFCQHIPESMNEEASRVCPA
VLLSIDDSDAIVCIALWEAVLHVLTTIEDCWSHVNAKKGVLPKLWTVLQEGGRGLATVIY
PNILPFISKVPHNVADPKLNYSTTFFTSIIKGLFTERAMVCRSESSAIISTFMECLQFTV
LQNIGEEEEEVKIQEMLINIQLIPLIDTVIKEPKLQNGSLFYEIADMLNVWKTKAEITND
DRTSITFQRMLSNFWDGLSNICVGHVAVMDADEKSLAAVSSLLQILQNPENKMKTSRKKA
VNVRFVEDRKVEINAEHENFVDMRTSNESSNVIHEIHRKHTFPLQNESLEGLVCKLSELS
IGYTSQQTSDQHLKFLSALLSTFASHKVFQVLIEESDDVQYENPSIQFLHEKLIVWLKED
WRKETDFLVDILYSILHCCSSPIERENILNDLTKMDLKWSILLQIIQKACSSSEKHSLSS
TWLKGDVLGEKLVTLAHDLCNISLKMTVTSAESFHSEQWTLLSLVLSQLIKNESLIGEVY
VKRIIDKLQAALSKAKDLSEAGNTELSVSFICDIASSFFTSVKGCLMMPSSEDLLFTIFQ
LCAQTQDITRLSDFLVNKLKHTWMCGITSLVRQRSILHKESSFLQKSAFWVKNQLQTSVL
DIKSLQVLISVVNNLLTTLLEAEDVSACVLNDYVEWLTPTQTEWEKMRESLSTEWLRKPL
LEGRLSINCELPGIDHKFSIPAKLPSHLCTAALLSRMALLILEKKAVFENSEIERRKIDN
IIVEQLYALQWIEELANPSGLLLEFLHNTEVMKISHENLYLLNISQLLQILFNRSKESGR
LWALTMAKLINTKNFAPSEIKALFDSFESFFPLTEGNLHTLQSLSPVLSEEDKEELVIRF
TAKLMTCNGTDLFGTEGAFGYLGILNSCLNTQDTDYGEVMAGILKVIVSWRSDYEDSFLF
SCNLQETNPQLLGLNIEMIRFISLLLKKPVSLLESEWDFVMCSMLAWLETTCENPEVFPA
AQVQVFASVSCDLSASLSAYFQAATPEIVEKFPENLMSEWRDFFSEGIHSLLLPLLAKIT
RKEQDVMETSFQNSMLKSLGKALTYISKDQLLKHRLPAKFVAGQKTNLPDNIQTLLNTFS
PLLLFRARPVQITVYHMLNKIMSDLPKFDNVDLRSYGDEEEELLLSPPAALMTVLTTQED
LLENILECIPVGEFAEIQPMSDEFCLILGYLLTWKLILSFFKGASSQLRALYSQCLRRTK
SLNKLLYHLFRLMPENPTFPGSISELSNKDVKTYFTEELDLDIKDTLAMSSHIPHLACTV
YCMTLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSGILSSQEISSVQTSTQLFNGMTVK
ARSATREVIATYSVDDIFIELIIQLPPNYPLGSIAVESGKRVGVAVQQWRNWMLQLSTYL
THQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLY
KWFTSSNKSTCPLCRETFF
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcaagaacaagcagcgaactaagggcaacgtacggccttctagcagtggaaga
acagctgaacttctagctaaagaacaaggaactgttcctggatttgttggctttggcacc
tcttcaagtgacctgggatacgttcctgcagttcagggagctgaagaaatagatagcctt
atagatgctgattttcgtatggtgctaagaaaactttccaaaagagatgtcacaaccaag
ttaaaagctatgcaagaatttggggcaatgtgcaaagaaagagagacggagattgttaaa
ggagttctaccttactggcctagaatttattgtaaaatttctcttgatcatgatcgccga
gtccgggaagcaacacagcaagcttttgaacagcttattctgaaagtcagaaaacattta
gctcctcatttaaaaaacattatgggatattggcttatagctcagtgtgatatttactct
ccagcagcatcagcagcaaaagaggcatttgaaaaggcctttccaccaagcaaacaacct
gaagccttaatgttttgtaaagatgaaattttaaatgtactacaggataatcttttgaaa
gaaactcctgatacactaagtgatccacaagcagttccagaagaagaaagagaagccaag
tttcatcgaattataacttcttctttattatctttaaagaaattgctttgtatgatgccc
gataatgagattaaatcattggaagagagacttaagacacttctctctcaaaacaaattt
tggaaatatgggaaacataacatagcacaggttcgttcggctttctttgaggtaattact
actttttgtcaacatattcctgagtccatgaatgaagaagcatcaagagtttgtccagct
gttcttcttagcattgatgatagtgatgctattgtatgcattgctctttgggaagctgta
cttcatgtccttactactattgaggattgttggagccatgtaaatgcaaaaaaaggagtt
ctaccaaaattatggacagtgcttcaagaaggaggaagaggacttgctactgttatatat
cctaatatcttgccatttattagcaaggtgcctcataatgttgcagatccaaagctgaat
tattcaacaacattcttcacttctataattaaagggctattcaccgaaagagcgatggtt
tgtcgttcagaatcttcagcaatcatatcaacttttatggagtgtttacaatttacagtc
ctacagaatattggtgaagaagaagaagaagttaaaatacaagaaatgcttataaatatc
cagttaattcctctcattgatacagtaattaaagagcccaagttacaaaatggatctttg
ttttatgagatagcagacatgctgaatgtttggaaaacaaaagcagaaataactaatgat
gatagaacatccatcacttttcagagaatgttatctaacttttgggatggcctttcaaat
atatgtgtgggacatgttgctgtaatggatgcagatgagaaatcgttggctgctgtgtct
tctttgttgcaaattcttcagaacccagaaaacaagatgaaaacaagtagaaaaaaagct
gtaaatgtaagatttgtagaagacagaaaagttgaaattaacgccgaacatgagaatttt
gttgacatgagaactagcaatgaatccagtaatgttattcatgaaattcataggaaacat
acttttcctctacagaatgaatctttagaaggtttagtttgtaaactttcagaactaagc
atagggtacaccagccaacagacatctgaccaacacttaaagttcctctctgctctactc
agcacctttgcttcccataaagttttccaggtgcttatagaagaaagcgatgatgttcag
tatgaaaatccatctattcagtttctgcacgaaaagttaattgtttggctgaaagaagat
tggagaaaagagacagacttcctggttgatattttatatagcattctccattgctgcagc
agtcccatagagagggaaaatattctcaatgatttaacaaagatggatctaaaatggagt
attcttcttcaaataatccaaaaggcttgttcaagctctgagaaacattccttaagttct
acatggctaaaaggagatgtattaggtgagaagcttgtgactctggcccatgatctgtgt
aacatcagcttgaagatgacagtaacttcagccgaatcatttcattcagaacaatggact
ctcctaagcttggtattatctcagttaattaaaaatgagtccttaattggtgaagtttat
gttaaaagaataattgacaaacttcaagccgctctgtcaaaagctaaggatctttcagaa
gctggaaatacagaactatcagtgtctttcatctgtgacatagcctccagttttttcact
tcggttaaaggatgtttaatgatgccatcctctgaagatttattattcactattttccag
ttatgtgcacagacccaggatataacacgtttatcagatttccttgtaaataaattgaag
catacttggatgtgtggcatcacttcacttgtgcgtcagcgtagcattctgcataaggag
agcagcttcctacagaaatctgcattctgggttaagaaccagcttcagacatcagtattg
gatataaaaagtttgcaggttttgatctctgtggtcaataatttgttgactacattgcta
gaagctgaagatgtttctgcttgtgttctgaatgattatgttgaatggcttactccaact
cagactgaatgggaaaagatgcgggaatctctgtccactgagtggttgaggaaaccactt
ctggaaggaagattaagtattaattgtgaattacctggaatagatcataaattttctatc
ccagctaaacttccaagtcatctttgtactgcagctctgcttagtagaatggcattattg
atactggaaaagaaggctgtgtttgaaaattctgaaatagaaagaagaaaaattgataat
atcattgtagaacagctgtatgccttacagtggattgaagaattagcaaacccatctggt
ttgctacttgaatttcttcataatactgaagtaatgaaaatttcacatgaaaatttgtat
ctactcaatatttcccaacttttacaaatattgttcaatagatcaaaagagagtggacga
ctttgggctttaacaatggctaaattgataaatacaaaaaactttgcaccctctgagatt
aaagcactttttgattcatttgagagctttttcccattaactgaaggaaacctgcataca
cttcagagtctgtctccagttttatccgaggaagataaggaagaacttgtcattagattc
acagctaaactaatgacatgtaatggaactgatctcttcggtactgagggagcatttgga
tatcttggcattttaaattcctgcttgaatactcaagatactgattatggagaagtaatg
gctggaatattgaaggtcatcgtatcttggcgcagtgattatgaagatagttttcttttc
agctgcaatctacaagaaacaaatccacagctgcttggtttaaatatagaaatgatccgt
ttcatttctctgttgctgaagaagcctgtctccttattggagagtgaatgggattttgtc
atgtgctccatgctagcatggttagaaacaacctgtgaaaacccagaagtctttcctgcc
gcacaggtacaagtctttgcttctgttagctgtgacctgagtgcttctctaagtgcatac
ttccaggcagcaactcctgaaatcgttgaaaaatttccagaaaacctcatgtctgaatgg
cgggacttcttttcagaaggcattcatagcttgcttctgcctctgttggcaaaaatcacc
agaaaagaacaagatgtaatggaaacatcatttcagaactccatgttgaaatctttgggt
aaagctttaacatatatatcaaaggatcagttactgaaacacaggcttcctgccaaattt
gttgctggtcagaaaacaaatctccctgacaatatacagactttgttaaatactttttct
ccattattactcttcagagctagacctgttcaaattacagtgtaccacatgctaaacaag
ataatgtctgatttacctaaatttgacaacgtggatctcagatcttatggtgatgaagag
gaggaactattattgtccccaccagcagcacttatgactgttcttaccactcaggaagat
ttactagaaaacatcctagaatgcattccagttggagaatttgcagaaattcagccaatg
agtgatgagttttgccttattttaggataccttcttacctggaaattaattctttctttc
ttcaaaggagcttcttcccagcttcgagctctttattcacaatgccttcgaagaactaag
agtttgaataaactattatatcacttgttcaggcttatgccagaaaacccaacttttcct
ggatcaatatcagagctttcaaataaagatgtaaaaacatattttactgaagagcttgat
ttagacatcaaagacacactagcaatgtcttcacacattccacatttggcttgcactgtc
tattgtatgaccttaaaagatttgccagctatggttcgtctttggtggaacagttgtgag
aagcgagtcttcaacgttgtagataaatttacaagcaaatacgttagtggtatactgtct
tcccaagaaatatcttctgtgcagaccagtacccagttgtttaatggcatgacggtaaaa
gctcgatctgccactcgagaagtcattgctacttactcagttgatgatatattcattgaa
ctgatcatacagcttcccccaaattatcctttgggctccatagctgtagagagtgggaaa
agggttggtgtagcagttcagcaatggcgcaattggatgctgcagcttagcacttacctc
actcatcagaatggaagcattatggaagggctagcattgtggaaaaacaatgtggataaa
cgatttgagggcgttgaagactgcatgatctgtttctcagttatacatggctccaactac
tcccttcccaaaaaagcttgcagaacatgcaagaaaaagttccattcagcctgcctgtac
aaatggtttacatctagcaacaaatccacttgccctctttgccgagagactttcttctga
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integrated database retrieval system
