Pituophis catenifer annectens (San Diego gophersnake): 139316307
Help
Entry
139316307 CDS
T11059
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139316307 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcae03021
]
139316307 (PCF11)
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139316307 (PCF11)
Transcription machinery [BR:
pcae03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139316307 (PCF11)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
139316307 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
139316307
NCBI-ProteinID:
XP_070799058
LinkDB
All DBs
Position
Unknown
AA seq
1733 aa
AA seq
DB search
MSGGGAATTTTAASEGAASGGGGTTTGGGNSEDACRDYQSSLDDLTFNSKPHINMLTILA
EENVPFAKDIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVSTFVNVF
EKVDENTRKSLFKLRSTWDEIFPLKILYALDVRVNSVDPAWPVKPLPPNVNTSSIHVNPK
FLSKSPEEPAAPSSTVCSLPVSCSAVSSTPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQ
QKKLELELEQTKAQLAVSLSVQQSGSNLGQAPLKQHVPQPPHMPVKAPHPACLPLEKNRL
SPLQDAKIATRDPRLNRTSQHSSHLKEQTHRKDFLMNAVSQPDPKTSKIPQSEKQNATKP
EKLKQNEKLQKKEFDQMDAKSKLASPLQNKLLHPKETRNQECENPRVSDINKRDPRLKKH
LLEKPDGKDDDLKEKRRCVERKDKEEHRSVGGRNKVINGIVQKQDPNTEESEKQSGKPGR
SSTRKRSRSPRSRSPSAHSPKRRERRSPKRRLRSLSPTGSKIGKPRQSGPKQSHLEDFGS
GARDDRSSNKRNIKQEVRDSRRPKKIHEDRPQEGMNQHSSKSNSEPKENLENWQGSKSSK
RWKSGWEENKNPQLTEEHQGLGKSLHQRHRDTWATNKGVPSPRTPKQQHRLSVDANLQIP
KELTLANKREILKKASERLTSGEITQDEFLVLCHKIRQLFQYQEGKHRCEWDNTPGEKGI
SKKKPLLSESDLIYHEHKAKLKRTQVQHSFPRLNMIDPEEILDYHLPILSGIDCDQTKNK
CGAQFGERSRRHSPVGGSRPYSDNSPHDVRRRHDEPSASKGLREEQRINDIFKRTRYEDT
EKPFTDLPGSRFGVSDGKQRFSSLIEDRAHFEGSPRHPGIRASGDGQPGHFEGPANAAPR
IEGPQAQTNLRFEGSLGQPASQFEGPQGQSGGKGSHLFDGPPAQLGGGPLRFDGPSGQVS
TGSAIRFEGPIGQPGGSLRFEGPSGQSVGGMRFEGTHGQPSGGMRFEGPHSHATAGIRFE
GPHGQSSAGMRFEGMHDQPSNNIRFDGQPSGGLRFEGPHGQPSNAIRFEGPHDRPVGPHG
PPGSGMRFEGPHGQPVGPHGQQGSGLRLEAPHMQPVGSLGQPGSNMPFDTPHGQPIGPHV
QPASGLRFEGPHGQPVGAHGQPLGSRFEGPHNQPLGPHGQLGISPRFETPSVQTGGGLRF
EGPINQTRFDGCPSRFDGQPGQPSILQRLDGLHVQPGSRFEIGPAQTPPRFDGPPGQQVQ
PRFDTILQRFDDPQHPATRYDILLGHQGPRIENVANHPGSRLETAPYGQTGPYNEAPNQP
PYNGASQGLQFQRPDQIFDNPQGPNFNGPPVSGAQHFPNAINRAPGPFYEDKNIQGPQFR
NFNNMTVGNVQPPQQVPVLPVSSGQPFNQAQPLLPVHGQNPGGFVQNPPGNIPLSYPDNH
LGQLDVNELFSKLLSTGILKSLQPDSSSSQVSEVSTQPPPEEEEDDQDQNEDIPDLTNFV
IEELKQRYDSIINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHR
RWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGVDES
CEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTSSFDSTPSPSKTPVENP
LNIMLNIVKQEGQDSCNSPKVKEEPEEKATDCTDGNIPESAEIKTEPLKVESV
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcgccgcgacgacgacgacggcggcgtccgaaggggccgccagcggt
ggcggcggcaccaccaccggtggcggcaacagcgaagacgcctgccgcgactaccagtcg
tcgctggatgacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggcc
gaggagaacgtgcccttcgccaaggacatcgtctcgctgatcgaggcgcaaatcgccaag
gctccttctaatgagaaacttcctgttatgtacctaatggactccattgtcaagaatgtt
ggacgagaatatcttgctgcatttactaaaaacctagtttcaacatttgttaatgtgttt
gaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgttccacgtgggatgaa
attttccctctgaagattctctatgctcttgatgttcgggtgaattcagttgaccctgct
tggcctgttaagccgttaccccctaatgtgaatacttctagcatccacgtgaatcctaag
tttttaagtaaatcgcctgaggaacctgctgcacctagctctacagtctgttctcttcct
gtgtcctgttctgctgtgtcctctactccaattgttcctgaaatacaaaagaacttaacg
caagagcagctgataagacaacagctgctggcaaaacaaaaacagttgttagaacttcaa
cagaagaaattagaacttgaattagaacagacaaaagcacagctggctgtttccctcagt
gtccagcaaagtggatctaatctgggccaagcacctttaaaacaacatgtgccgcagcca
cctcatatgccagttaaagctccccatccagcttgtctgccactggagaaaaaccgtttg
tctccactccaggatgccaaaatagccactagagaccctcgtcttaacagaacgagtcag
cattcgtctcatttgaaagagcagactcataggaaggactttctgatgaatgcagtcagt
cagcctgacccgaagactagcaaaattccacaaagtgaaaagcaaaatgccacaaagcca
gaaaaattaaaacagaacgagaaactgcagaagaaagaatttgatcaaatggatgcaaag
tcgaaattggcctctccattgcaaaataagctgcttcaccctaaagaaaccaggaaccaa
gaatgtgagaatcccagagtgtctgacattaacaagagagaccccaggttaaaaaaacat
ctcctagagaaaccagatggcaaagatgatgacctcaaagaaaaaagaagatgtgtggag
aggaaagacaaagaggaacatagatcagttggtggtagaaataaagtaatcaatggcatt
gtacaaaagcaagatcccaatacagaagagtcagagaagcagagtggaaaaccaggaagg
tcaagtactaggaaacgatcacgttctcctagatctcggtcaccatctgcacattctcca
aaacgaagagaaaggaggtcacctaaaagaaggcttaggagtctctctccaactggatct
aagattgggaaaccacgacagtctgggcccaaacagtcgcatctagaggattttgggtca
ggagcacgggatgacagaagctcgaataagaggaatatcaagcaggaggtgagagattct
aggaggccaaagaaaatccacgaagaccgaccccaagaaggaatgaatcaacattcttcc
aagtcaaattcagaacccaaagaaaatctggagaattggcaaggttccaaatcaagcaaa
aggtggaaatcgggctgggaggaaaataaaaaccctcaacttactgaagagcatcaagga
cttggtaaatcccttcatcagaggcacagggatacttgggcaactaataaaggagttcct
tcacctcgcaccccaaaacagcaacatcgattaagcgtagatgctaatttgcagataccc
aaagaactgaccttggcaaacaagagagagatacttaagaaggcaagtgaacgtctcaca
tctggtgaaataacacaggatgagtttcttgtcctgtgtcataagattcgccaacttttc
cagtatcaggaaggaaagcatagatgcgagtgggataatacaccaggtgaaaaagggatt
tccaaaaagaagcccttattatctgaatcggatttaatataccatgaacacaaagctaag
ctaaaacgaacgcaagttcaacattcatttccaagactcaatatgatagatcctgaagaa
atattagactatcatttaccaattctttctggaattgactgtgaccaaacaaaaaacaaa
tgtggtgctcagtttggtgaaagatcaagacgacattctcctgttggtggtagcagacca
tactctgataattctccacatgatgtcaggagaagacacgatgagccaagtgcctcgaaa
ggtcttagagaagagcagaggatcaatgacattttcaagcgaacaagatacgaagatacc
gagaaaccgttcactgaccttccaggatcccgatttggagtctctgatgggaagcaaaga
tttagttcattgattgaggacagagctcattttgaaggttcacctagacatcctggcata
agggcaagtggagatggacaaccaggtcattttgaagggccagctaatgcagctcctcga
attgaagggccacaagcacagacaaatttgaggtttgaaggatctctaggtcagccagct
tctcagtttgaagggccccaaggacaatccggaggaaaaggttctcacctgtttgatggg
ccaccagcacagcttgggggtggtcccttaaggtttgatgggccctcggggcaagttagt
acaggaagtgctatacgatttgagggtccgataggacaaccagggggaagtttacgattt
gaggggccttcaggccaatctgtgggtggaatgagatttgaagggacccatggtcaaccc
tcaggaggaatgaggtttgaaggacctcacagtcatgcaacggctggtattaggttcgag
ggacctcatggccagtcttctgctggaatgaggtttgaaggtatgcacgatcagccatca
aataatataagatttgatggccagccttcgggtggattgaggttcgaagggcctcatggc
caaccttcaaatgccataagatttgaaggacctcatgaccggccagtgggacctcatggt
ccaccaggaagtggaatgagatttgagggaccgcatggacagcctgtagggcctcatggc
caacaaggatctggtctaagattagaagccccacatatgcaaccggtggggtccctggga
caaccaggaagtaatatgccatttgacacgccacatggacagcccattggtccacacgtg
cagcctgcaagtggtctgagatttgagggccctcatgggcaacctgtaggggcacacggt
caaccccttggctctaggtttgaggggcctcacaatcagcctctggggccacatggacag
ctgggaatttctcccaggtttgagacaccttcagttcagactggaggtggtcttaggttt
gaagggcctattaaccagacaaggtttgatggctgtccgtcaagatttgatggtcagcct
ggccagccatcaattttacaaagactggatggattacacgtacaacctggttcaaggttt
gaaattggccctgctcaaacaccacctcgattcgatggcccacctggtcagcaggtccaa
cctcggtttgatacaatacttcagcggtttgacgatcctcaacacccagcaacacgatat
gacatcctccttggtcatcagggcccaagaattgaaaacgtagctaaccatcctggctcc
agattagagacggcaccatatggacagaccggcccatacaatgaagctcccaaccagcca
ccttataatggggcatcacaaggactgcagttccaaagacctgaccaaatatttgataat
ccccaaggaccaaacttcaatggcccacctgtttctggagcacagcactttcctaatgca
attaacagggccccaggacctttttatgaggacaagaatattcagggccctcagttcaga
aattttaataatatgacagttggaaacgttcagccgccacagcaggtacctgttctgcca
gtatcttctggccagcctttcaatcaagcgcagccactattgccagtccatggacaaaac
cctggaggttttgttcaaaatccaccagggaacatcccactttcctaccctgataatcac
cttggacaacttgatgtgaatgagttattttcaaaactactctctacaggaatccttaaa
tctttacaacccgattcatcttcatcacaagtcagtgaagtttcaactcaaccacctcca
gaagaagaagaggatgatcaagatcagaatgaggatattccagacctaactaattttgtg
atagaagaactaaaacaacgttatgatagcattataaacaggctctacactggcattcag
tgttactcttgcggaatgaggtttacaacttcccagacagatgtgtatgctgaccatctg
gattggcactatcgccagaaccgtacagaaaaggatgttagcaggaaaatcactcacaga
agatggtactacagcttaacagattggatagagtttgaagaaatagccgatttagaggag
cgtgcaaagagccagttctttgaaaaagtacatgaagaagttgtattaaaaactcaagaa
gctgctaaggagaaggagtttcagagtgtccctgcaggcccagctggcgtggatgagagc
tgtgaaatctgccaggagcagtttgagcaatattgggatgaggaagaggaggaatggcac
ttaaaaaatgcaattcgtgtagaggaaaagatctaccatccatcgtgttacgaagattat
caaaagacttcatcatttgattccaccccatctccaagcaagactcctgtggagaaccca
ctaaatattatgttgaatattgtcaaacaagagggacaggactcatgtaacagccccaaa
gttaaagaagaaccggaagaaaaagctacggattgcacggatgggaatatacctgaatct
gctgaaattaaaacagagcctctaaaggttgaatcggtttaa
DBGET
integrated database retrieval system
