Pituophis catenifer annectens (San Diego gophersnake): 139316861
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Entry
139316861 CDS
T11059
Symbol
DCHS1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pcae04515
]
139316861 (DCHS1)
Cell adhesion molecules [BR:
pcae04515
]
Cadherins
Cadherin related
139316861 (DCHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
RET_CLD1
Cadherin_2
Fibulin_C
Cadherin_4
PepSY
SusE
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
139316861
NCBI-ProteinID:
XP_070799803
LinkDB
All DBs
Position
Unknown
AA seq
3235 aa
AA seq
DB search
MGPLARILLLLLPLLGGRCTAVPGTLDLQVDEEMPAGTIIGDISAGLPTGTTSYMYFISA
QEGSGVATDLEIDENTGIIKTAGVLDHESRDHYSFIAVTPDGATVEVNIQVNDINDHAPT
FPKQRAALFIPEHTHPGSHFPLDPAFDADSNLLSTQGYAIKAGNVDQAFQLETRRGPNGV
LHPELVVSSILDREVRSAFTLLLEAYDGGSPPRSSQMTLEVSVQDVNDNVPTFNQSRYHT
LIPENLLPGSSILQVFAWDADEGDNGAVVYEINRRQSDPEQFFTIDASTGVIKLNKGLDY
ELRKVHELVVQARDKAIHPEVSTAFVTIQVRDYNDNQPTMTIIFLSEDGSPRISEGAQPG
QFVARISVSDPDYGEYANVNVSLEGGEGKFALTTKDNIIYLICVDQMLDREERDSYELRV
TATDAGTPPLRAESAFVLQVMDINDNPPLFDAQEYEQSVPEVVYPGSFVLQVTARDKDQG
PNGEIRYSILHSHHSHSHWFAIDPATGIVTTASALDYETDPQPRLTVLATDRGKPPLSST
TVVLVTLQDVNDNEPVFESNFYNISLKENVSPGTCFLQIMATDADSGSLGSISYALGTGL
GSLVPSAFLLGEKTGQLCTAQGLDRDEGPSAYDFTVTAVDGGGLSSTAYVKVFLEDVNDN
APAFYPLEYAASISTQSQPGSAVLRVTAHDKDEGLHGRVTYRIANGNMLTVFAINPDTGV
ISLRRPLTGKANLLVQLEVEAEDGGGLAAQPTAQVNISIVAGTVSPPSFERVQYYFTVPE
DTRPGSSVGSIHAYNAQGQTDSVFYSISAGDPQGHFSIDPSSGQLHTNLALDHEAQSILT
LEVQARSGSPPAYSSARVQITVSDVNDNPPRFPSSSDSVSLPEGVALGTIVYTVQAEDPD
SGANGQVHFELASRGMAAFGVERLSGKVRLMGALHQESLSPYKLLILAQDGGTPRLSATF
TLLVHVQAEDQLGPLFDTLTYRVEVREGVLVGTHFLQVRALAREHNAFLAYHLRADGDAT
SFGIAPDTGWLHVRRTLDREVQELYVLTVLAVAGEGEGRQTGTSTVRVTVTDENDNSPRL
SEERYFFTVVENRPAGSSVGRVIATDWDAGSNSHLTFRLVPHEGHFLIHTQTGELSIRKS
LDREQQSSYQLQVLVQDGGTPPRSTTGTIYVTVLDENDNAPAFLHVAEGRELLLQVLEDK
PAGLLVAALQAKDPDKGENGTVFYTLSGAWAEHFSLHVSTGELRTANPLRQADQGEYLFT
VTASDRGAIRRSTAATLRIQVVSSSHVLPRPETTVLTFYAMEDLPPGSSIGSVAPLELPP
HGQVTYMLVGGNNGDGFFVVDTSTGEIYLVQELDYEAERRHTLHVSVEDSWHGYPSQHLL
LVEIHVQDSNDHSPTWPQDPITVVVSESATPDLALFTFQALDGDGPGPNSQLRYSLLQQD
ILHPIFQLDAVTGELSLQAPLDRESQSAFLLAVMATDQVHNVSQRHSAAVTAHIFIMDEN
DNAPEFLSPPRVNVPEDQPTGFLVLQVVARDRDMGENGRVSYLLQAGNPDGQFHLNPSTG
ALSIVRGLDREEVSQHNLTVVATDHGSPRHTTTQLLLVQVLDVNDETPTFEKSVYEGQVA
ENLPAGVPVLQLHATDQDLGTNGQVTYGGIAGDDFMIDPHTGLISTLGPLDHEERAEHLL
TVYAQDGGLPPRQAKATVRILVVDENDHAPVFQNDAYSLAVPENQSHQKLLTLRATDHDA
GDNGRISYSLAAGDPEGDFALDSLTGQLSTVQGLDRERKPTYMLTTQACDNGFPARCAST
AIQVQVLDLNDNTPHFLQEAYTAEVPEDLPVGAPVLQLKARDPDEGNNGRISYFLANESL
GAFQVEPQTGRLYSTQPLDREREAIYHFQGLAVDSSPSVPRSASAVITVTVQDVNDHVPS
FPLSPLAITLPRHTPPKRVVATLRAEDHDAGANASILYRFAVPAPAFAINTYTGAIQLLQ
PLGSLSQRQRTLFVLASDLGQPPLSSIGVVVIHLQDESHQGVHFPRSTSDVVLPENTAPG
TLVLSTPARHTTGSSGQITYSIVSGNENGAFRIQADSGVISVSNTEGLDFELQPRLRLVL
QAESPTSFSFMAVTVNLQDVNDNQPRFQLQNYVAFVGEAQGYDLPVIQVVANDLDQGPNG
QVVYRINQTQPMDGLYRINAQTGAITTAAILDREIWAQTRLVLTATDRGHPPLVGSATLT
VVVMDLNDNSPTIPAPWEVRVAEDTLLGTEITVVTGNDVDCGPQLIYALFLDSGNTRTFS
ILPYGGHIVLTEPLDYEQRSHYTLTVRASDSQHETEANLTVLVEDVNDNAPTFGQALYQV
LVPEQTPAGTPILTLSATDLDSGTNGEVTYQLLTASNLVAIHASNGTLFTTQCLMLELER
PTLDLVVEACDKGLPSLSAWATVQIQVLDVNDHRPQFLKRQYNASVTEDLRPGTILLTLE
ATDADVTRDNAALDYTIVSGNSGHAFQLEGHVGEASALVLIEPLDFEGVALYNLTVAVAD
RGVPQHSAIVPVVLTVLDVNDNPPVFGRSAYHMAVSESTMPGTELLRVAAHDPDLGPHGQ
VHYSISSGDPSGLFQLHPSSGALRLVKALDCEKWTQHNLVIQASDGAGGHFSLASVAVEV
KDVNDNLPYFPIAMLSTSLRENLPPGSLVTTVRAVDPDVGIFGELHYALLQAEDWGAFDI
NSSSGELHSRLPFDYERSKAFQLLVQAMDAGNGSATVTVRILVTGEDEYDPVFLSSSFHF
DVPEGARRGQSIGQVTATDEDEGPDGVVLYALTKPSPFFEINQTSGILYLQMDSQAPSGG
ATRSEPRQMVLEVQAHSPLRASRSASTQVTIDVTHTAFGLVPDLNLLLVIAVAASLSVVV
VLAAVAIVLALLRSQQGHSHKEADLAHMQSGSLQKLGHADPALPGGDCLYHEALPGYGTD
SGGAYTTRGGSLDPSHSSGRGSAEAAEDDEIRMINECPRMSSVTSSLQEHLVARGPDSGI
QTDADRLSDISCEPATLDATHWFKNRKGPSLLLPGQPPQLYRDDGGSSGAYLGSGCGLSV
SSAKDYSFPEDGKPCVDGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFTEIARLK
DESSLRKPFPAKPKPRIDPPPLITSVAHPGAKSVPPKPAVGRAFPHLSSLRRSPISHEGS
LSSAAMSPSFSPSLSPLAARSPMVSPFGVSQGPTASSTISIEHSLEAPEEAELHI
NT seq
9708 nt
NT seq
+upstream
nt +downstream
nt
atggggccacttgctcgaattttgctgctgctgctgccacttcttgggggccgttgcacg
gcagtgccaggcactctggatctgcaggtcgatgaggagatgcccgcagggaccatcatt
ggggacatcagtgcaggcctgcccacaggcaccaccagctatatgtacttcatttctgcc
caggagggcagcggtgttgccacagatcttgagattgatgagaacacgggtatcatcaag
acagcaggggtgctggaccacgaaagccgcgaccactacagttttattgctgtcacccca
gatggtgccacagtggaagtcaacatccaggtcaatgatatcaatgaccacgcccccacc
tttcctaagcagcgggctgccctcttcatcccggaacacacacaccccggcagtcacttc
cctttggatcctgcctttgacgcagacagcaacctgctcagtacccagggctatgcaatc
aaggctggaaacgtggatcaggctttccagctggagacgcgccgcggacccaatggggtc
ttgcacccagagctggtagtgagcagcattctagaccgcgaggtccggtccgccttcacc
ttgcttcttgaggcctatgatggcggatccccgccaaggagctcccaaatgactttggag
gtatctgtccaagacgttaatgacaacgtgccaaccttcaaccagagccgctaccatacg
ctaatcccagaaaacttgctccctggcagcagcatcctccaggtctttgcctgggacgcc
gatgagggagacaatggggcagtggtgtacgagatcaaccgtcggcagagcgacccagag
cagtttttcaccatcgatgcatccacgggagtaatcaagctcaacaaggggctggactac
gaactccggaaagtgcatgagctggtggtgcaggcccgggacaaggccattcacccagaa
gtttccaccgcctttgttacaatccaggtccgggattacaatgacaatcagcccaccatg
acaattatcttcctcagtgaggatggctccccacgcatctctgaaggggctcagcccggc
cagtttgtggcccgcatttctgtctctgaccctgactatggagaatacgccaatgtcaac
gtctctttggaggggggcgaggggaaatttgctctcacaaccaaagacaatatcatctac
ttgatctgtgtggatcaaatgttggaccgcgaggaacgggattcttacgagctgcgagtc
acagccacagatgctggaactccccctctgcgggccgagtcggcttttgtgctgcaggtg
atggatatcaatgacaatcctcctctctttgatgcccaggagtatgaacagagcgtccct
gaagtagtttacccaggcagctttgtcttgcaagtgactgcccgtgacaaagaccaaggg
cccaatggggagatccgctacagtatcttgcacagccaccactcccactcccactggttt
gccattgacccggccactggcattgtcaccactgcttccgccttggattatgagaccgac
ccgcagcctcggctgactgtgctggccactgatcgcggcaagccccccctctcctctacc
acagtggtccttgtcaccctgcaggacgtcaacgataatgagcctgtctttgaaagtaac
ttctacaatatttccttgaaggagaacgtgtcccctggcacctgcttcctccagatcatg
gccactgatgcagacagtggctccttaggaagcatctcttatgccctgggcacggggctc
ggcagcctggttccttcggcgttccttcttggcgaaaagaccggccagctctgcactgca
caaggcctggaccgggacgaggggccttctgcctacgacttcacagtcacagccgttgat
gggggtggtctcagctccacagcctacgtgaaagtctttttggaagatgtcaatgacaac
gcaccggcattctacccccttgagtacgctgccagcatcagcacccaaagccagccgggt
tctgccgttctgcgagtcactgcccatgataaggacgagggcctacacgggcgagtgacc
taccgcattgccaatggcaacatgctgaccgtttttgccatcaaccctgatactggtgtc
atttcgttgcggaggccgctcactggcaaggccaacctgttggtgcagctggaggtagag
gctgaagacggaggagggctggcagcccagccgactgctcaggtcaacatcagcattgtg
gcaggcactgtctcccctccgagctttgagcgggtccagtattactttacagtcccagaa
gatacccggccaggcagcagtgtgggatccatccatgcatacaatgcccaaggccaaaca
gacagtgtgttttactccatttctgcgggggacccacagggccacttctccattgacccc
agctcaggacagctgcacaccaacctggccctggaccatgaggcacagtccattctgacc
ctggaggtccaggcccgcagcggttccccacccgcgtacagcagtgcccgggtgcagatc
actgtctctgacgtcaatgacaatcccccccgcttcccttcatcctctgactctgtgtca
ttgccagagggggtggctctgggcacgattgtctacactgtgcaggccgaggatcctgac
agcggagccaacggacaagtgcattttgagctggcctcccgtggaatggctgcttttggc
gtggaacgtctgtcagggaaggtgcggctgatgggagcccttcatcaggagagcctcagc
ccttacaagctgctcattctggcgcaggatggagggaccccacggctcagtgccacgttc
accctcctagtccacgtgcaggctgaagaccagctggggcccctctttgatactctcacc
taccgtgtggaagtgcgggagggagtgctagtgggcacccattttttgcaagtgagggcc
ctggcccgggagcacaatgccttccttgcctaccatctgcgtgcagatggcgatgccacc
agctttgggattgcacctgacacagggtggctgcatgtgcgccggactcttgaccgggag
gtgcaagagctgtatgtgctgaccgtcttggctgtagctggagagggtgaagggcgccag
acagggaccagcacagtccgggtcactgtcacagatgagaatgacaacagtcctcgtctg
agcgaggagcgctacttcttcacagtggtagagaaccggcccgctggcagcagtgtgggc
cgagtgatagccaccgactgggatgctgggtccaacagccacctgaccttccgcctggtg
ccacacgagggccatttcctcatccacacccagactggtgagttgagcattcggaagagc
ctcgaccgggagcagcaaagcagctatcagttgcaagtcctggtacaagatggggggacg
ccgccccgcagcaccacaggcacaatctacgtcactgtgctggatgagaacgacaatgcg
ccggcctttctacatgtggccgagggacgtgagcttcttttgcaggttctggaagataag
ccagctggactgctggtggccgcactgcaggccaaggacccagataagggtgagaatgga
accgtcttctacacgctgtcaggtgcctgggcagaacacttctccctgcatgtatctacg
ggggagttgcgcacggccaaccccttgcggcaagctgaccagggagaatatctgttcact
gtcactgcaagtgaccgaggtgccattcgcaggagtacggctgctacgctgcgcattcag
gtggtctcttccagccatgttctcccccgccctgaaacaaccgtactgactttctatgcc
atggaggacctgccacctggctccagcattggctcggtggctcccctggaactaccaccc
catgggcaagtaacttacatgctggttgggggcaacaatggagatggtttctttgtcgtg
gacaccagcacgggcgagatctacttggtgcaagagctggactatgaagcagagaggcgg
cataccttgcatgtgagcgtggaagactcatggcacggttatcccagccagcacctgctc
ctggttgagattcacgtgcaggacagcaatgaccacagccccacctggccccaggacccc
atcacagtggtggtgtcggagagcgctacgccggaccttgctctcttcactttccaggct
ctggatggcgacggtcccggtcccaacagccagctgcgctatagcctcctgcagcaggac
atcctgcaccccatcttccagctggatgccgtcacgggggaactgagcctgcaggctcct
ctggaccgagagagccagtccgccttcctgctggctgtcatggccacagaccaagtccac
aatgtcagccagcgccactcggccgccgtgaccgctcacatcttcatcatggacgagaac
gacaatgcacccgagttcctttctccaccaagagtcaatgttcccgaggatcaaccaaca
ggctttctggtgctgcaggtggtggccagagaccgggatatgggcgagaatgggcgagtc
agttacttgttgcaagcagggaaccctgatggtcaattccacctcaatcccagcacaggg
gcattatccattgtgcggggtctggaccgggaagaagtatctcagcataacttgaccgtg
gtggccacagaccacggatccccacggcacaccaccacacagctcttgttagtgcaggtg
ctggatgtgaatgatgaaacaccgacctttgagaagagcgtctatgaaggccaggtggcc
gaaaaccttcctgctggcgttccagtgctgcaactccacgccaccgaccaggaccttggg
accaatggccaggtgacttacggtgggatcgctggggatgacttcatgattgacccccac
acgggcctgatcagcactttaggccctttggatcatgaggagcgagctgaacacctcctg
acagtgtatgcccaggatgggggcctgcccccccgccaggccaaggccaccgtgcgtatc
cttgtggtggatgagaatgaccatgcccccgtcttccagaatgatgcttactctctggct
gtgccagagaaccaaagtcaccagaagctgctcaccctgcgagccacagaccacgatgcg
ggggacaatgggcgcatctcttactcactggcagctggggaccccgaaggggactttgct
ctggactctttaactggccagctgtccactgtgcaagggctggaccgggaacgcaaaccc
acctacatgctaaccacccaagcgtgcgacaatggctttcctgcccggtgtgccagcaca
gcaattcaagtgcaggtgctggatctgaatgacaacactccccactttttgcaagaggcc
tacaccgcagaggtgcccgaggacctgcctgtgggagcccccgtgttgcaactcaaggca
cgagatccggacgaaggcaacaacggacggatttcgtatttcctggcaaacgagtcactg
ggagccttccaggtggagccgcaaacaggccgcctgtacagcacccagccgcttgaccgg
gaacgcgaggccatctaccacttccagggcttggctgtcgattcttccccttcagtcccc
aggagcgcctctgcagtcatcactgttactgtccaggatgtgaacgaccatgtcccatcc
ttccccctcagcccactcgccatcaccctgccccgccacaccccgcccaagagagtggtg
gccactttgcgtgcggaggaccatgatgccggggccaacgcctccatcctgtatcgtttt
gctgtacctgccccagccttcgccatcaacacatacactggggccatccagctgctgcag
cccctgggaagcctcagccagcgccagcggaccctgttcgtgctggccagcgacctgggg
cagccccccctctcctccattggcgtggtggtcattcatctgcaggatgagagccaccag
ggagtccactttccacgcagcaccagtgacgtggtccttcctgagaacactgccccaggc
acactggtgctgagcaccccagctaggcacaccacaggatcatccggccagatcacctac
agcatcgtgagtggcaacgagaatggcgccttccggatccaggccgactcaggagtgatt
tccgtctccaacactgaagggctggactttgagctgcagccccgcttgcgtttggtgctg
caagccgaatcccccacctccttcagcttcatggccgtcaccgtcaacctgcaggacgtg
aatgacaaccagccacgcttccagctgcagaactacgtggcctttgttggggaggcccag
ggctacgatttgccggtcatccaggttgtagccaacgatttggatcagggccccaatggc
caggtggtttacaggatcaaccagacgcagccaatggatgggctctaccgaatcaatgcc
cagacgggagccatcaccacagcagccattctggacagggagatctgggcccaaacccgg
ctggtgctgactgcaacagacagaggacaccctccccttgtgggctcagccacactcaca
gtggtggtgatggatctcaatgacaatagtcccaccatccctgcaccgtgggaagtgcgg
gtagcggaggataccttgctaggcaccgagatcactgtggtgactgggaatgatgtggac
tgtggaccacaactcatctacgcactcttcctggacagcggcaacactaggaccttcagc
atcttaccctatgggggccacattgtgctaacagagcctctggactacgagcagcgcagc
cattataccctcacggtgcgtgcttctgactcccagcatgagacagaggccaatctcacg
gtgctggtggaggacgtgaacgacaatgctcccacttttggccaggcactctaccaggtg
ctcgtcccagaacaaacccctgctggcactcccatcctgactctcagcgccacagacctg
gactcgggcaccaatggagaagtcacctatcaactgcttacagcaagcaatcttgtggcc
atccatgcaagcaatggaaccttgttcaccacccagtgtctgatgctggagctcgaacgt
cccacgctggatttagtagtggaagcttgtgataagggtctccccagcctctcggcctgg
gccactgtgcagatccaggtcctggatgtgaatgatcacagacctcagttcttgaagcgt
cagtacaatgcctctgtgacagaggacctgcgcccaggaacgatcctgctgactctggaa
gccacagatgcggatgtgactcgggacaatgctgctctggattacactattgtgagtggg
aacagcggtcatgctttccagctggagggccacgtgggtgaggccagtgccttggtcctg
attgaaccccttgacttcgagggtgtggctctctacaacctcactgtggcagtggctgat
cgaggagtgccacagcacagtgccatagtgcctgtggttctcaccgtgctggatgtcaat
gacaacccacctgtctttggccgctctgcttaccatatggctgtgagtgagagcaccatg
cctggtacagagctgctgcgggtggcagctcatgaccccgacttgggcccacatggccaa
gtacactacagcatcagctccggggaccctagtgggctcttccagctgcatccatcctcg
ggagcacttcgcctagtcaaggctctggactgtgagaaatggacccagcacaacttggtg
attcaggcctcagatggagcaggtgggcatttttccctggcatccgtggctgtggaggtg
aaagacgtgaacgacaatcttccctactttccgatagccatgctgagcaccagcctgagg
gaaaacctacctccaggaagcctggttaccaccgtccgtgcagtggaccctgatgttggg
atctttggggagctgcattatgcccttctgcaggcagaggactggggtgcctttgacatc
aacagcagctctggggagctacattcgcgcctgccctttgactacgagcgcagcaaggct
ttccagttgcttgtgcaggccatggatgctggcaatggctctgcaacagtcacagtgcgc
atcttggtcactggagaagatgagtacgaccctgtcttcctcagctcaagcttccacttt
gatgttccggagggggcgcgtcggggccaaagtatagggcaggtgactgccacagatgag
gatgagggcccggatggggtagtcctctatgccctgaccaagccatccccgttctttgag
atcaaccaaacgagcgggattctgtatctgcagatggacagccaggcgccttcagggggg
gccaccaggtcagaaccacggcaaatggtcctggaggtacaagcccacagtcccctacgt
gcctctcggtcagcctccactcaggtcaccatcgatgtgacgcatacggcctttggtctg
gtgcccgatctcaacttgctgctggtgatagcggtggctgcctcgcttagtgtggtggtg
gtgctggcagccgtggccattgtgcttgctctcctccggtcacagcagggccatagccat
aaggaggctgatttggcacacatgcagagtggctccctgcagaaattgggccacgcagac
ccagccctgcctgggggggactgtctgtaccatgaggcactgcctggctatggcacagat
tcagggggggcctacaccacgagagggggatcactggacccatcccactcaagtgggcga
ggctcagctgaagctgccgaggatgacgagatccgtatgatcaacgaatgtccccgcatg
tccagcgtcacctcttccctgcaggagcatctcgtggcacgcgggcctgattctggcatt
cagacagatgctgaccggctttctgacatctcctgtgaaccggccacgcttgatgccacc
cactggttcaagaacaggaaggggccaagtctgttgcttcctgggcaacccccgcagctt
tatcgggatgatggtggcagcagtggggcctacctgggctctggctgtggcctcagcgtc
tcctccgccaaggactactcttttcctgaggatgggaagccctgcgtggacggctccctg
actgccattgtggcaagtgacgaggaactgcgtggcagctacaactgggactatcttctg
aactggtgtcctcagttccagcctctggccagcgtgttcacagagatcgcccgcctcaag
gacgagagctccctgcgcaagccctttcctgccaagcccaagccccgcattgacccccct
cccctcatcacttccgtggctcaccccggggccaagtcggtgccccccaagccagcagtc
ggccgggctttcccccacctgtcctcccttcgacggtcccccattagccacgagggctcc
ctctcctcggcagccatgtctcccagcttctccccctcactctcccctctggccgcccga
tctcccatggtgtccccctttggggtctcccaggggcccaccgcctcctccaccataagc
atcgagcactccttggaggcccccgaagaggcagaacttcacatttag
DBGET
integrated database retrieval system
