Pituophis catenifer annectens (San Diego gophersnake): 139317210
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Entry
139317210 CDS
T11059
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03013
Nucleocytoplasmic transport
pcae03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139317210 (UPF1)
03015 mRNA surveillance pathway
139317210 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139317210 (UPF1)
Enzymes [BR:
pcae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139317210 (UPF1)
5.6.2.5 RNA 5'-3' helicase
139317210 (UPF1)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139317210 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
139317210 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
139317210
NCBI-ProteinID:
XP_070800299
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGVVA
PGTPGLPGGGVGVGAGGSPSVVAPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTFVDYGDEIAIELRSSVGAPV
EVIHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI
ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP
LWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIP
GSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQANG
PAAGGMFAGRGNLKGKTGRGGRQKNRFGIPGPSQSNLPNSQASQDVVSQPFSQGPLTQGY
ISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagttcgcagacgttgactttcctcgacaccgaggag
gccgaactgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcaaacgccgcccggcggaggctccgggagcggaggaggcgtcgtcgcg
ccggggaccccgggactcccggggggtggcgtcggagtgggcgcgggggggtcgccttcc
gtcgtcgctccggggcagctggacgcccaggtaaatggaccagatggcatcctccagaat
ggggcagtggatgataatgtgcctaaaaccagccaacttcttgcggagctgaattttgaa
gaagatgaggaagacacttactatactaaggaccttcctgtacatgcctgcagctattgt
ggcatccatgacccagcttgcgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacctctggcagtcacattgtgaaccatcttgtgagagccaagtgcaaa
gaagtgactcttcataaggatggtcctctgggcgagaccgtcttggaatgctacaattgt
ggctgtcgtaatgtgtttcttcttggcttcatcccggccaaagctgactctgtggtcgtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtcaaaattcct
tcagaacaggaacaactgagggcccggcagatcacagctcagcaaattaacaaactcgaa
gaactgtggaaggagaacccatctgccactttggaggacttggaaaagcctggggttgat
gaagagccacagcacgtcctccttagatatgaagatgcttatcaataccagaacatcttt
ggtcctcttgtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ctgccaaagactgattcagatatgcgtttgatgcaaggggatgagatctgcctgagatac
aaaggggacttggccccactgtggaaaggaattggccatgtgattaaagttcctgatact
tttgtagattacggtgatgaaattgcaattgagttgagaagtagtgtcggtgccccggtg
gaagtgattcacaatttccaagtggattttgtatggaaatcgacatcctttgatagaatg
cagagtgccctaaaaacatttgctgtggatgaaacatcagtttctggctacatctatcac
aagcttctgggtcatgaggtggaagatgttataattaaatgtcagttgccaaagcgcttc
acagcacaaggacttccggatctcaaccattctcaggtgtatgcagtgaagactgttttg
cagcgccccttgagtcttatccaggggccccctggcacaggcaagactgtgacatcagcc
acaattgtgtatcacctggcaagacaaggaaatgggcctgtgctggtttgtgccccaagt
aacattgctgtggatcagctgaccgaaaaaatacatcagacggggctgaaggtggtgcgc
ctgtgtgcaaagagccgtgaggccattgattcacctgtctctttcttagcattgcataac
cagatcaggaatatggatagcatgccggagctccagaaactgcagcaactgaaagatgag
actggggaactgtcatctgctgatgagaagcgctaccgagcacttaaacgaacagctgag
cgggaattgctaatgaatgcagatgtcatttgttgcacatgtgtcggagccggcgaccca
agacttgctaaaatgcagtttcgttccattttgatcgatgaaagcacacaggctactgaa
ccagagtgcatggtgcctgttgttcttggggcaaaacagttgatcctggtgggcgatcat
tgccagctcggccctgtcgtaatgtgcaagaaggcagctaaagcaggtctgtcgcagtcc
ctctttgagcgactggtggtattgggcattcggcccattcgcctgcaagtccagtaccgc
atgcacccagccctgagtgcttttccttccaacatcttttatgaagggtcactccagaat
ggcgtcactgcagcagaccgtgtgaagaaggggtttgacttccaatggcctcagccagac
aagcccatgtttttctacgtgacccaaggacaagaagaaattgcaagttctggcacttct
tatttgaacagaacagaggcagccaatgtggagaaaataaccacgaagctactgaaggct
ggtgcaaagccagatcagattggtatcatcacaccctatgagggccagcgttcatatttg
gtgcagtacatgcagtttagtgggtctttgcataccaagctttatcaggaagttgaaatc
gctagtgttgatgctttccaagggcgagagaaggacttcattatcctctcctgtgttaga
gccaacgagcatcaaggcattggcttcctgaatgatccccggcgtctcaatgtggctctc
acaagagcaagatatggggtcattattgttgggaatccaaaggcactctccaaacaacct
ctttggaatcaccttctgaactactacaaagagcaaaaggtcttggtggagggaccattg
aacaatctccgtgaaagcctcatgcagtttagcaagcctcgaaaactggtcaacactatc
aatccaggagcccggtttatgacaactgctatgtatgatgcccgtgaagctattatccct
ggatcagtttatgatcgcagcagccaaggccggccctccaacatgtatttccaaacccat
gatcagattgggatgatcagtgctgggcccagtcacgtcactaccatgaacattcctatc
ccattcaacttggtgatgcctcccatgccaccaccagggtactttggacaggccaacgga
ccagctgcaggtgggatgtttgcaggacgtggaaacctgaaaggcaaaactggccgtggt
gggcgacaaaagaatcgttttgggattccaggacccagccagtcgaacctccccaacagc
caggccagccaagatgtggtctcccagcctttctctcagggccccttgactcagggttac
atctccatgagccaaccctcgcagatgagccagcctggcctctcccagccagaattgtca
caggatagttaccttggtgatgagtttaaatctcagattgacgtggccctgtcgcaggat
tcaacttaccagggggaacgcgcatatcaacatggagtgacggggctgtcacagtattag
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integrated database retrieval system
