Pituophis catenifer annectens (San Diego gophersnake): 139318000
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Entry
139318000 CDS
T11059
Symbol
NFKB2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04010
MAPK signaling pathway
pcae04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139318000 (NFKB2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
139318000 (NFKB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcae03000
]
139318000 (NFKB2)
Transcription factors [BR:
pcae03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
139318000 (NFKB2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
139318000
NCBI-ProteinID:
XP_070801331
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MDGEGYPACLDGIDYDDFQFGAHLMEQKELFMETVEGPYVTILEQPKQRGFRFRYGCEGP
SHGGLPGASSEKGHKTYPTVKISNYTGLARIEVDLVTHTDPPQVHAHSLVGKQCNEAGNC
IMMVGPKDMTAQFNNLGVLHVTKKNMMEVIKDKLQKQKMRNRVQPLTAESEEELIEQEAK
ELKKTMDLSIVRLRFNAYLRDSSGNFTLALNPVISDPIHDSKSPGASNLKISRMDKTAGS
VRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKTKI
DRPVTVFLQLKRKRGGDVSDSKQFTYYPVVEDKEEVERKRKKILPQFPQHFGGGAPMGGA
GGGAGGFGSNGAGSPWHSSGYSPYNNSIYLSGSHPMGNYQGGRGIQMPRTARLEDSEHHP
SEDGTDYIELLQHAQECSSWMLMVARRSAQALLDYAVTADPRMLLAVQRHLAASQDENGD
TPLHLAIIHEQTTVIMQLVQVAVSIPNQQIINITNHLQQTPLHLAVITHQPRVAGFLLQA
GADPTLLDRYGNSVVHLAVHLDDEEMLKTVLCHLGPQTLPLLEIPNYLGFFPVHLAVKCT
KSAPLELLVEKGANVNAAERQSGRTPLHLAVEMDNLNMAACLMKKLGADVNAQTSAGNTP
LHLAAGLGSPILTKMLISAGADVLCENDEPILDSSSQPNSDIELDEEDWVTELEETDGEL
MKQGLDYIPVLESEQSKTRETNQGRGHTPLDLTCSQKVREILLQALKQDAGKTQTGISFA
PNQGNILLLNNDVLQRLETLLNQGCQGANWTELAKKLGLCSLVEMYKDTVSPSRRLLLSY
EIAGGSLEGLLEALGSMGLTEGVSLLQRLETFDKLQSTELKEDSAYGSQSVEAESAALSG
KLQPAPLLEPPSSLPHNQQEQVH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgaaggctatcccgcgtgcttagatgggatagattatgacgattttcagttt
ggtgctcatttgatggagcagaaagagctgttcatggagacagtcgaaggcccatatgtc
actatacttgaacagcctaaacagcgaggtttccggttccgttatggctgtgaagggccc
tcacatggtggattgcctggagcatctagtgagaaggggcataagacttatcccactgtc
aagatctctaattacactggactggctaggatagaggtggacttggtgacacacacagat
cctccacaagtacatgctcatagccttgtgggaaaacagtgtaacgaagctggcaactgc
attatgatggtgggcccaaaggacatgactgcccaatttaataacctaggtgtgctccat
gtgactaagaaaaacatgatggaggtcatcaaagacaaactgcagaagcagaagatgcga
aacagagtacagcctctaacagcagaatctgaagaagaattgattgaacaagaggcgaaa
gagttgaagaagacaatggatctcagcattgttcgtttacgcttcaacgcctatcttcgt
gatagtagtggaaacttcactttagcattaaaccctgttatttccgaccccattcatgat
agcaagtctcctggagcttccaacctaaaaatatctcggatggataagaccgcaggctca
gtgcgaggtggcgatgaagtatatttgctgtgtgataaagtccagaaagatgatattgaa
gtgcgtttttatgaagatgatgagaatggttggcaggcctttggagatttttcccccacg
gatgtgcataaacagtatgccattgtcttccgtactccgccttatcacaagacaaaaata
gatcgtccagtcactgtgttccttcagctgaagcgcaagcgagggggtgatgtgagtgac
tccaagcagtttacatactacccagtggtagaagataaggaagaagtagaaaggaagcgt
aagaagatcctaccccagttcccgcagcacttcggtggcggtgcgcctatgggtggcgct
ggtggtggagccggtggatttggttctaatggagctggtagtccctggcattcttcagga
tatagtccctataacaacagcatatacctatctggatcgcatcctatgggcaactatcag
ggtggaagaggtatccaaatgcccagaactgctagactggaagacagtgaacatcatcct
tcagaagatggtactgattatattgaactgctgcagcatgctcaggaatgcagttcctgg
atgctaatggtagctcgacgcagcgcccaggctctactggattatgcagttactgctgac
ccacgtatgttgttggctgtccaaagacacctagctgcttctcaggatgaaaatggagat
acgcctttgcacttagctattattcatgagcagacaaccgtgattatgcaactggtccag
gtggctgtaagcattcctaatcaacagatcatcaacatcacaaatcacttacagcagaca
ccgttacatctggctgtgatcacccatcagcccagggtggctggtttcttacttcaggct
ggagcagatcccactttgctggatcgatatggcaactcagttgtgcatttggctgtacat
ttggatgacgaagagatgttgaagacggtcctctgtcatttggggccccagactctccca
cttcttgagatacctaactatcttggtttttttcctgtgcatcttgctgtgaagtgcaca
aaatcagcccctcttgagttgctagttgagaaaggagcgaatgtgaatgcagcagaacgg
cagagcggacggacacctttacatttagctgttgaaatggataatcttaacatggctgca
tgtttgatgaaaaagctgggagctgatgtaaacgctcagacgtctgctgggaatacaccc
cttcacttggcagcaggattgggttctccaattcttacaaagatgctaatcagtgcagga
gcagatgttttatgtgaaaacgatgagcccattttagattcttcatcccaaccaaacagt
gacattgagctggatgaagaggactgggtgaccgaactggaagagactgatggggaactg
atgaagcaaggcctggattatattcctgtgttggagagtgagcagtccaaaacgcgtgaa
acaaatcagggtcggggacataccccacttgatttgacttgtagccagaaggtaagagag
atactactacaagctttaaaacaggatgctggaaagacacagactggtatttcttttgcg
cctaaccaagggaacatcttacttttgaataacgatgttcttcagagactagagacactc
ttaaaccagggctgccaaggggcaaattggacagaattggccaagaaattaggtctctgc
agtttagtagagatgtacaaagacaccgtttcccccagcagaagactcctactcagctat
gagattgctggtggcagccttgaaggtctgttggaagcgcttggctccatgggattgacg
gaaggtgtgagtttactgcagagattagagacttttgacaagctacaaagcacagagctg
aaggaagacagcgcttatggtagtcaatcagtggaagcggaatctgcagctttatctggg
aaactgcaacctgccccattgctggagccaccttcttccttgcctcacaaccagcaggag
caagtccactga
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