Pituophis catenifer annectens (San Diego gophersnake): 139318835
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Entry
139318835 CDS
T11059
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcae03009
]
139318835 (PDCD11)
Ribosome biogenesis [BR:
pcae03009
]
Eukaryotic type
90S particles
Other 90S particles
139318835 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_N
HAT_PRP39_C
OB_RRP5
OB_RRP5_4th
TPR_14
HAT_Syf1_CNRKL1_C
PCB_OB
TPR_19
ARM_TT21
TPR_CcmH_CycH
HAT_Syf1_M
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
139318835
NCBI-ProteinID:
XP_070802563
LinkDB
All DBs
Position
Unknown
AA seq
1813 aa
AA seq
DB search
MSSMEETFPRGGTQKKGQEEKTVRQSTEKDDNLFKTQHEEVTRKRKKKHEDQKEPKKLKF
EKKAVSKTSAKDFELLSAESLTEGTLLLGCVKKSNEFDLVISLPNGLTGFVKITCLCDAY
SELLNKQVATDEPVEELNSLSDLFPPGMLVRCAVEGTEKNAMGHQKIHLTINPKDVNKGL
NPTVLKAGMLLSGCVSSIEDHGYLIDIGIPGTKAFLPRQKAQGYLQSLTKGTELMIGQYL
NCLIEEVKNGGRIIRISINQSEVASAIATEKQNWSLANLLPGLVVKAQVQEVTSSGVSLS
FLSSFTGIVDFMHTNSLKTGHLSPNQMVKACILSNNPASKAIRLSLRPVFLQPGVQLGQL
SNDRIGVVVTDSKVELFLKNVGAVFKLDDGSHAFSHIKYLPKTSKSFKTEVFKPGSKHAC
RIIDYSLIDDMIVVSLKQHIINAPFLRYHDIHPGQVLEGKVLTLKPLGMQVKFTESIKGF
VPNLHLADVKLKQPEKKYSTGTTVKCRVLACNPETKKLILTLKRTLVNSKLPVLDSFEDA
KPGLITHGFVACIKDFGCIVKFYNDVRGLVPTNELGLLPLTAPQEAFYEGQVVKVTVLKC
EPEQERLLLSFRLEEDAIAKNAERTETSKGHEMAYKTGQIVDVKILNKKEDGLEVAILPN
NVSAYLPMAQLSDHVSNSRLWWHWLKEGDVLQKVICLHNKGGHLLLSRKPALISSMEDEH
VVKSFADIQPGLLLTGFVRNIMSYGVFVEFPYGLTGLAPKSAMSDKFVTDTKDHFVVGQT
VLAKVTSVDEEKQRILLSLKMSECSVEGSVPESFSLLEQYFNELQEILSFMSNRDDTSVA
KKLSKLKVGQRLELVVTEVKADGSAVFSGPCVSDLTVIAIHSHLGGKSIVEGQKAKAVVL
CVDLLKSKIYVSLREELLSLKAKKLILNSQYEAFVHHVATEHAVVSLLGAGQLTAIPVAS
HLNDTFRFDSEKLKTGQSVKVVLKSTQIGDHGMVLAVQSSGKKKSVIRSRHESETLEDIS
LATKQLPSSGDLVSGVVKSVKPTHVLVAFNDRLTGSIHASQILDDVTVGTFPTSLLKVGQ
KITARVIGGRGVKSRKYLPITHTLFTRTFLELSIRPSELKGESKAALNAENDSPEEPLKP
GQTVTCYVKKYNVLKKRLEVEVTPTIRGRVLQLLLSSNPKDIKHVRKCFKKGQALIATVI
DCDISGTKLSLSLIGSCSLEKGTIALGTVKRLVPHVGLHIILPFGRIGKVSLFHLNDSYT
EQPLEDFDVGKMVRCYILSVEDNAVKVSLRPSRINPKAHRKVEDPEIASLDNIQKDQLIR
GYVKSITASGISLGLSDSVVGQIPFQYVTPFFVPDHSLCMKYIHTDQLLTAKVLSINRQE
NLVELSLLPEDTGKPSIIPCDEKPCSEMDTPSQKSRNQRRKHSESEQEVTPAKKRAHCTE
DGDSGVEVYYREEEEKEKKQKKKSKGKEVPRLKVSTSFMWEEGLNVLDGTTLIPKEQSSD
SEEENDAESMAKKQTKKKQELEKQKAEKELSKLEAALMDPKRQPQTADDFDRLVLGSPNS
SILWLQFMAFHLQATEIEKARAVAERALKTISFREEQEKMNVWVALLNLENMYGTEEGLM
KVFERAVQYNEPLKVFQQLVDIYSASEKYKEADDLYNTMLKRFRQEKSVWVKYTTFLLKR
GSVEAAHRLMPRALKCLPDKEHVDVISKLAQLEFQFGDAEHGKAMFENMLSTYPKRTDIW
SVYIDIMIKHGSQKEIRDIFERVIHLNLTAKKMKFFFKRYLEYEKKYGTVETIQAVKAAA
LEYVESKNSLAES
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctatggaggagacttttccaagaggtggtacacagaagaaaggacaggaagaa
aaaacagtcagacaatcaacagaaaaagatgataatttattcaagactcaacatgaagaa
gtaactcggaaaagaaagaaaaaacatgaagatcaaaaggagccaaaaaaacttaagttt
gaaaagaaagctgtttcaaaaaccagtgctaaagattttgaacttttgtcagcagagtct
ctcacagaaggaacactgctgttaggatgtgtgaaaaagagtaatgaatttgatctggtg
atcagcttaccaaatggtcttactggatttgtgaaaataacatgcctatgtgatgcctat
agtgaactactaaataagcaggtggccactgatgagcctgtggaggaactgaattctctc
tcagacttgtttcctccaggaatgttggtgagatgtgctgtggaaggcacagaaaagaat
gctatgggacatcagaagatacacttaaccattaatccaaaagatgtcaacaaaggtttg
aatcctacagttttgaaagcaggcatgctactctctggatgcgtatctagtatagaagac
catggttaccttattgatataggtattcctggaacaaaagcatttcttcctcggcagaaa
gcccaaggctacctgcaatcactcaccaaagggactgaactgatgatagggcaatatctg
aactgccttattgaagaagtaaagaatggtggaagaataatccgcatatccatcaatcag
tctgaggttgcttcagccattgccacagaaaaacaaaactggtcacttgccaacttgcta
cctgggctagtggtgaaagcccaggttcaggaggtgacttcttctggagtttctctaagt
tttctctcttcctttactggaattgtggatttcatgcacacaaattctctaaaaacagga
catttatcaccaaatcagatggtgaaagcctgtattctttcaaataatcctgcctccaag
gcaattcgtctttctttgcgcccagttttccttcagcctggcgtccagcttggccaactt
tccaatgatcggattggcgttgtagtaacggactcaaaagtagagctgtttctcaaaaac
gttggtgctgttttcaagctggatgatggcagtcatgctttttcacatataaagtatctt
ccaaagacttccaaatctttcaaaactgaggtatttaagcctggaagtaaacatgcatgc
cgaattattgactacagcttgatagatgatatgattgtggtgtctctcaaacaacatatt
attaatgctccatttctgagatatcatgatatacatcctgggcaagtgctggaagggaaa
gtgttgactctgaaaccgttgggcatgcaggtgaagttcactgagagtatcaaaggcttt
gtccccaatttgcatcttgcagatgtaaaattgaaacagccagagaagaagtatagcacg
ggaactactgttaagtgccgggtacttgcctgcaatcctgaaacaaagaagcttattctg
actcttaagagaacccttgttaattccaagctccctgtccttgacagttttgaagatgcc
aagccaggcctgatcactcatggttttgttgcatgtattaaggattttggatgcattgtg
aaattctataatgatgtgaggggcttagtacccactaatgaacttggcttgctcccctta
actgctcctcaagaagccttctatgaaggccaggtagtcaaggtgactgtattaaaatgt
gagcctgagcaagaaagattgttgctgtcattcagattggaagaagatgctattgcaaag
aatgctgaaagaacagaaacttcaaaaggccatgaaatggcatataaaactggacagatt
gtagatgtaaaaattctgaacaagaaagaagatggcctagaagtcgcaatcctacccaac
aatgtttcggcctaccttcccatggcacaactttctgaccatgtgtccaatagcaggttg
tggtggcactggctcaaagaaggtgatgttctccaaaaggttatatgcctccataacaaa
ggaggtcaccttctcttgagtagaaagccagcattgatttcctctatggaggatgaacat
gtagtgaagagttttgctgatatccagcctggattactgcttactggctttgtgagaaac
atcatgtcttatggtgtatttgtggagtttccctatggtttgactgggctggcccccaaa
tcggcaatgagtgacaagtttgtgacggacaccaaagaccattttgtggtaggtcaaact
gtacttgccaaggtgaccagtgttgatgaggagaagcagcgcatcttgctgtccctgaag
atgtcagagtgctctgttgaggggtctgttcctgagagctttagcctactggaacagtac
tttaatgaactgcaggagattctgagcttcatgagcaatagagatgataccagtgtggct
aagaaactttccaaattaaaagtggggcagaggctagaattggtagttaccgaagttaag
gctgatggttcagcagttttcagtggtccatgtgtttctgatttgactgtaatagccatt
cacagccaccttggaggcaaaagtattgttgaaggtcaaaaagcaaaagctgtagttctc
tgtgttgatcttctgaaatcaaaaatctatgtatctcttcgagaggaactgttgtctctc
aaagccaagaagttaatcctgaattctcagtatgaggcttttgtacaccacgtggctaca
gagcatgcagttgtttccttgttaggagcaggtcagctgacagcaatccctgtggcttct
cacttgaatgatacattccgatttgattctgaaaaactgaagacgggacagtcagtcaaa
gtggttctgaaaagcacacagattggtgatcatgggatggtacttgcggtgcaaagttca
gggaagaagaagagtgtaatcagatcacgtcatgaatcggagacacttgaggatatatca
cttgcaacaaaacaattgccaagctcaggagacttagtcagtggagttgtgaagtctgtc
aaacccacccatgtcttagtggcatttaatgataggttgactggctccattcatgcatct
cagatcctggatgatgttactgtaggcacttttccaacatcattactaaaagttggacag
aagattactgctcgggtgattgggggcagaggtgttaaaagtcgcaaatatttgcccatc
acccacaccctcttcacccgtacattcctagagctcagtatccgaccaagtgaactgaaa
ggggaaagtaaagcagccttgaatgctgaaaatgacagtccagaagaaccactgaaacct
gggcagacggtgacatgctatgttaagaagtacaatgtgttgaagaaacggctggaggtg
gaggtcactcccaccatcagagggagagttctgcagctgctgctttcttcgaatcccaag
gatataaaacatgtcaggaaatgcttcaaaaaaggacaagcgttgattgcaacagtgata
gattgtgatatttctggaaccaaactctctctgtcactaataggctcttgttcactggag
aaaggaacaattgcactgggcactgtgaaacgactggttccccatgttggtctgcatatt
atccttccatttgggaggattggcaaagtcagtcttttccacctaaacgattcatacaca
gaacaaccacttgaagacttcgatgttggaaaaatggtcagatgttatattctttccgtt
gaagacaatgctgtaaaagtatccctccgaccatccaggataaatcctaaagcccatcgt
aaagttgaagatcctgaaattgcttcccttgataacattcagaaagatcaactcatcaga
ggctatgtcaaatccattacagcatcaggcatctctttggggttgtctgattcagtggtg
ggtcaaattccctttcaatatgtcaccccattctttgtgccagatcattcactctgtatg
aagtacatacatacagatcagcttctcactgccaaagttctcagtataaacagacaagag
aaccttgtggagctctctctccttcctgaagacacagggaagccaagcattattccatgt
gatgaaaagccatgtagtgaaatggatacaccctctcagaaatcaagaaatcaaaggagg
aagcactctgaaagcgagcaggaagtaacgccagcaaaaaagagagctcattgcactgag
gacggtgatagtggtgtggaggtttattatcgggaggaagaggagaaggaaaagaagcag
aagaagaagtctaagggaaaagaagttccacgactgaaggtttcaaccagctttatgtgg
gaggagggcttaaatgtgctggatggaacaacattgattccaaaggagcagagctcagac
agcgaggaagaaaatgatgctgaatccatggccaagaaacaaacaaaaaagaaacaggag
ctggagaagcaaaaggcagagaaagaactctccaagctggaagctgccttgatggatccc
aagcgacagccgcagacagcagatgacttcgaccgcttggtcctcggcagtcctaacagc
tccatcctttggttgcaattcatggcttttcatctccaagccacagagatcgaaaaagct
agagctgttgcagaaagggcactaaaaactatctcctttagagaggaacaagaaaagatg
aatgtgtgggtcgctttgctgaacctggagaacatgtatggcacagaggaaggactgatg
aaagtttttgaaagagcagttcagtacaatgagcctctgaaggtttttcagcaattggta
gatatctacagcgcgtctgagaaatataaggaagctgatgacctatataatacaatgctg
aaacgcttccgtcaagaaaagtctgtgtgggtaaagtacaccacttttcttctgaaacgt
ggttcggtggaggcagctcacagacttatgccacgggcactgaaatgcttgccagacaaa
gagcatgtggatgtgatttcaaagctggcacagttagaatttcagtttggtgatgcagaa
cacggcaaggccatgtttgaaaacatgctgagcacataccctaaacgtacagacatctgg
tcagtgtacatagacataatgataaaacatggaagccaaaaagaaatccgggatattttt
gaaagagtgattcacctaaatttaacagcaaagaagatgaagtttttctttaaacgctat
ctggagtatgagaagaagtatggtacggtggaaaccatccaggctgtgaaggcagcagca
ttggagtatgtggaatccaagaacagccttgctgagagctaa
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integrated database retrieval system
