Pituophis catenifer annectens (San Diego gophersnake): 139318852
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Entry
139318852 CDS
T11059
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04136
Autophagy - other
pcae04140
Autophagy - animal
pcae04145
Phagocytosis
pcae04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
139318852 (ATG16L1)
04140 Autophagy - animal
139318852 (ATG16L1)
04136 Autophagy - other
139318852 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
139318852 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcae04131
]
139318852 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
pcae03029
]
139318852 (ATG16L1)
Membrane trafficking [BR:
pcae04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
139318852 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
139318852 (ATG16L1)
Mitochondrial biogenesis [BR:
pcae03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
139318852 (ATG16L1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
DSE1_N
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
eIF2A
CFAP251_N
WD40_RFWD3
Beta-prop_VPS8
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_NOL10_N
Beta-prop_ACSF4
Beta-prop_IFT140_1st
Beta-prop_HPS5
ASA1
KASH_CCD
CCDC93_CC
CCDC146_CC_N
Beta-prop_SPT8
Beta-prop_Vps41
Fez1
HEF_HK
CLIP1
AP5B1_middle
DUF2332
Motif
Other DBs
NCBI-GeneID:
139318852
NCBI-ProteinID:
XP_070802593
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MSVLLKTSSFPTWKRHIMDELKRRDRLQRQAFEEIILQYNKLLEKSDFHSVLADKLQVEK
YDLPSRHEISPGHDGARNDAHLQEVAQLRIKHQEELTELHKKRGELAQSVIDLNNQIQQK
DKEIQINNVKIAEYLQKISELETECHDLCNKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVTRWMAEKAQEANRLNAENEKDLRRRQARLQKELAEAAKEPLPIEQDDDI
EVLADETSDPAEDTSPVRAVTRTASKRLSQPTGGLLDSITNIFGLSESPLLGHHSSDTAR
RRSLSSCPVPQDNTDVLPTASREVRLPNTAVCVFDAHDGEVNAVQFSPGSRLLATGGLDR
RVKIWEVFGDKCEFKASLSGSNAGITSVEFDNAGSYLLAASNDYASRIWTVDDHRLRHTL
TGHSGKVLSAKFLLDKARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDLVCTEQCVMS
GHFDKKIRFWDIRTESVVQEVELLGRITALDLNPERTELLTCSRDDLLKIIDLRINAVKH
TFSAPGFKCGSDWTRVVFSPDGNYVVAGSADGSLYIWSVLTGKVERTLSKHHSNPINAVA
WSPSGAHVVSVDKGNKAVLWSEF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttttacttaagacatcgagcttccccacctggaagcggcatatcatggatgaa
ctgaagcgtcgagaccggttacaaagacaggcctttgaagagataatcttgcaatataac
aagctcttggagaagtcagatttccattcagtgctggctgacaaactacaagtggagaag
tatgatttgccaagccggcatgagatcagcccaggacatgatggtgcaagaaatgacgct
catcttcaagaagtagctcaattaaggattaaacatcaagaggaattgacagagctgcac
aagaagcggggcgagttggctcaatctgtgattgacctaaacaatcaaatacaacagaag
gacaaagaaatacaaataaataatgtcaaaattgcagaatatttacagaagatatctgaa
ctggagactgagtgccatgatttgtgcaacaagcttcaagatctcgaacgagctaatcag
actcttaaggatgaatatgatgctctccaaatcacctttaatgctcttgaagaaaaatta
aggaaaaccactgaagataaccaagaactggtaacccgttggatggcagaaaaggctcaa
gaagctaatcgcctcaatgcagaaaatgagaaagatttaaggagaaggcaagctcggctt
cagaaagaactagcagaagctgctaaagaaccactgccaattgaacaggatgatgatatt
gaagtccttgctgatgaaacctccgatccagctgaggatacatctccagtccgtgctgtc
acacggacagcaagtaagcgactctcccagcccactggaggccttctggattctatcact
aatatctttggtctgtctgagtctccccttttgggacatcactcttctgatactgccagg
aggcgttccttatcctcatgtcctgtccctcaagataatactgatgtacttcctactgca
agcagagaggtccgactacccaacacagcagtgtgtgtctttgatgcacatgatggggag
gttaacgcagtccaattcagccctggttctcgtttattagcaacaggaggcttggatcgg
agagtcaaaatttgggaagtttttggtgataagtgtgaatttaaagcctccctatctggc
agtaatgcagggattactagtgtagagtttgataatgctggttcctacttattagcggct
tcaaatgactatgccagtaggatctggacagtggatgatcatcggttacggcacacgctc
acggggcatagtggaaaggttttatcagcaaaattccttctggacaaagctcgcattgta
tctgggagtcatgacagaacactcaagctatgggacctgcgcagcaaagtctgtataaaa
acagtgtttgctgggtccagctgcaacgatcttgtctgtacagaacaatgtgtaatgagt
ggacactttgataagaaaattcgcttttgggatattagaactgaaagtgtggtacaggaa
gtggaattgctgggaaggattacagctctagatctcaaccctgagagaacagagcttctt
acatgttctcgtgatgatctgttgaaaattattgatctcagaatcaatgctgtcaaacat
acattcagtgctccaggatttaaatgtgggtctgattggactagagttgtattcagccct
gatggaaattatgttgtggctggctcagcagatggatcactttatatatggagtgtgctc
actggaaaagtggaaaggacactttccaagcatcacagcaatcccatcaatgctgtggca
tggtcaccatctggagcccatgtggtcagtgtggacaaaggaaacaaggcagtgctgtgg
tctgaattttaa
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integrated database retrieval system
