Pituophis catenifer annectens (San Diego gophersnake): 139318976
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Entry
139318976 CDS
T11059
Symbol
LAMB1
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04510
Focal adhesion
pcae04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139318976 (LAMB1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139318976 (LAMB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
ATG17_like
F5_F8_type_C
BNR_6
Motif
Other DBs
NCBI-GeneID:
139318976
NCBI-ProteinID:
XP_070802691
LinkDB
All DBs
Position
Unknown
AA seq
1785 aa
AA seq
DB search
MGVFQVFLLCCFPGLWAFVAGQGPEYSYGCAEGSCYPATGDLLIGRANKLTVTSTCGLHK
PDPFCIVSHLQEDKKCFTCDSRDPFHETLNPDSHRIENVVTTFAPNRLKLWWQSENGVEN
VTIQLDLEAEFHFTHLIMTFKTFRPSAMLIERSSDFGKTWQVYRYFAYDCENSFPGVSAG
PMKKVDDIICDSRYSDIEPSTEGEVIYRVLDPAFRIEDPYSPRIQNMLKITNLRVNFAKL
HTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVHGYDKEVEGMVHGHCMC
RHNTKGLNCELCLDFYHDLPWRPAEGRNSNACKKCNCNEHSAQCHFDMAVYIATGNTSGG
VCDDCQHNTAGHNCEQCKPFYFQHPERDIRDPHICEPCNCDPVGSENGGICDRYTDYSAG
LIAGQCRCKFFVEGERCDTCKEGFYGISIDNPHGCQSCACSPLGTHPGGNPCDSETGNCY
CKRLVTGKHCDHCLPENWGLSNDMDGCRPCDCDQGGSLNNNCSSESGQCQCRPHLIGRQC
QEVEPGYFFISLDHYVYEAEDAKFGPGVSLVERLYSQDRVPSWTGIGFVRVPEGAYLEFY
IDNIPFSMEYDVLIRYEPQLPDHWEKATISVYRPGQIPPSSRCGNTVPDDDNQELSLSPG
SRYAVLPRPICFEKGLNYTVRLELPQYSSDSEVENPYTLIDSLVLMPYCKSLDLFTVGGR
GDDVTTNSAWETFQRYRCLENSRSVVKTPMTDVCRNIIFSISAVLHETALACQCDPQGSL
SSVCDPNGGHCQCRPNVVGRRCDKCAPGTFGFGPTGCKPCECHAQASVNAFCHPETGQCH
CFHGIYGRPCDRCLPGYWGFPSCQPCQCNGHADECDPYSGQCLNCRDHTSGPNCERCFAG
FYGDPVLGSGDHCRPCPCPDGPESGRQFANGCYQDRITLQVVCVCERGYKGSRCDECASG
FFGNPEEVGGRCHPCQCNNNIDSSDPEACDKKTGLCLRCLFHTQGEHCQECKPGYYGWAL
QQDCRKCVCNYLGTVRHRCNSSENCDCEKETGQCQCLPNVVGQNCDHCAPNTWKLSSGTG
CETCACNPEHSFGPSCNEFTGQCQCMPGFGGRTCTECQEYFWGDPTVSCQACECDSRGIE
TLQCNRSTGQCICKEGMEGLRCDKCTRGYSGTFPDCAPCHQCFALWDVIVTELTNKTHRF
LERAKVLKITGVSGPYRETLNSVEEKLNEIKSIIAQNPATEPLKNIGDLFEEAEKLKADV
AQKVIEVEEKISNVANESSIAEAGLTALEADAKSLHNAVKELAEQLEFIKISDIRGALDS
ITKYFQMSLEAEKRANASVLLPGSLVEQSAEMRLEVESLINETAATFQATQEEQSRLLDE
LGGKLQSLDLAEVSEKMCGTPPGSSCADSPCGGLSCQTEDGVKKCGGPGCEGLVTVANTA
WQKAIDFDRDILSALAEVEQLSKMVSEAKQRADEAKQNAQDVLLKTNATKEQVDRSNKDL
RNLIHQIRDFLMKDGADLDSIEAVANEVLNLEMPSTPEQLQTLADNIRDRVESLSDVESV
LQQSAGDIARAKALLDEAKKASKSATDVKVTADMVRQALEEAGRAQTTAEDAIKLAEKDI
EGTQGLLASIASETGSVEDRLGNATLRIAELEKNVETLRLKAATNAEDIKAAEENIAVVN
QTTADVQKILDDSVSEKYKTVENLIAKKTGESANARKKAEQLQNEAKILLEQATSKLQLL
KELEDRYEKNQRILEDKAKQVMELEETVRGLLQAISQKVAIYSTC
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgggagttttccaggtgtttctgctttgctgcttcccaggtctctgggccttcgtagcg
ggtcaaggaccagaatacagctacggatgtgcggaaggcagttgctatccggctacaggc
gacttgctgattggccgagccaacaagttgacggtcacctccacctgcggccttcacaaa
cctgacccattctgcattgtcagccacctccaggaggacaagaaatgtttcacgtgcgat
tcgcgggatccgttccacgagaccctgaatcctgacagccatcgtattgaaaacgtggtc
acgactttcgctccgaatcgcctgaagctgtggtggcagtcagagaacggagtagaaaac
gtgactatccaattggatctagaggcggaattccatttcactcatctcattatgaccttc
aagaccttccgcccttctgccatgttgattgaaagatcctcagactttggcaaaacttgg
caagtctaccgatactttgcctacgactgtgagaattcgttccccggcgtctccgccgga
ccgatgaagaaagtggacgacattatttgtgactcccgctattctgacattgaaccttcc
accgagggagaggtcatttatcgtgttttggatccggcttttcgaatagaagatccctac
agtcctaggattcaaaatatgttaaagattacaaatttaagagtcaactttgccaagctt
cacaccctgggagacaaccttctggattcaagaatggagatcaaagaaaagtattattac
gccatttatgacatggtggtgcgggggaactgcttctgttacggacacgccagcgaatgc
gccccggtgcatggctacgacaaagaggtggaaggaatggtccatggccattgcatgtgt
cggcacaacaccaaaggtttaaactgcgagctgtgcttggatttttaccacgatttgccg
tggcgtcccgcagaaggccggaacagcaatgcctgcaaaaagtgcaattgcaacgagcat
tccgcgcagtgccattttgatatggctgtttacatagccacgggaaacaccagtggcggg
gtgtgtgacgattgccaacacaacacggcgggacacaattgtgagcagtgcaagcccttc
tactttcaacatccggagagggatatccgcgatccccatatttgtgaaccatgcaactgt
gacccggttggctccgagaacggcggaatctgcgaccgatacaccgactactcggccggc
ctcatcgcgggacagtgtcgctgcaaattcttcgtggaaggggaacgttgtgacacctgc
aaagaaggattttacggaataagcatagacaatcctcatggctgtcagtcttgtgcttgc
agtccgttgggcactcatccgggagggaacccttgcgactccgagacaggaaactgttac
tgtaaacgtctggtgacaggaaagcattgcgatcattgtctgcctgaaaactgggggttg
agcaacgatatggacgggtgtcgcccctgtgattgtgatcaaggaggctcgctcaacaat
aactgctcaagtgaatctggccaatgccagtgcaggccgcatctgattggtcgccagtgt
caggaagtggaacctggttattttttcatatctttagatcattatgtctatgaagcagag
gatgccaaatttggcccgggcgtgagtttagtggaacgcctctattctcaagaccgcgta
ccttcctggactggaataggattcgtgagagtccccgaaggagcatatttggaattctac
attgacaatattccgttttctatggaatacgatgttctgattcgatacgagccacagtta
ccagatcactgggagaaagctaccatcagtgtatatcgcccgggccaaattcctcctagt
agtagatgcggcaataccgttcctgacgatgacaatcaagaattatccttatctcccggt
tccaggtacgcagtccttccacgccccatatgctttgaaaagggtctgaattacaccgtt
cggttggagctgccgcagtactcctcagactcagaggtggaaaatccatacaccctcatt
gattcactggttctcatgccatattgcaagtccctggacctcttcacggttggaggcaga
ggtgatgatgtgacaaccaacagcgcctgggaaacctttcagagataccgctgtctggaa
aacagccggagcgtggtgaaaactcccatgacggatgtttgcaggaacataatttttagc
atctcggccgtgctgcacgaaaccgcattggcttgccagtgtgacccgcaagggtcattg
agttcggtatgtgatcccaacggaggccattgtcaatgtcgcccaaatgttgttggccga
agatgcgataaatgtgccccgggcacttttggctttggacctactggatgtaaaccttgc
gagtgtcacgcccaagcttctgtaaatgccttctgccatccggagaccgggcagtgccac
tgtttccatggaatttatggccgtccgtgtgatcgatgtttgccaggatattgggggttc
ccgagctgtcaaccctgccaatgcaacggtcacgcagatgagtgcgatccgtacagtgga
cagtgcttgaattgtcgtgatcacacctcgggccccaattgtgagaggtgcttcgctggt
ttttatggagatccagtcttgggatcaggcgatcactgccgtccttgtccttgcccagat
ggaccggaaagtgggcgccagtttgccaacggatgttatcaagaccggattacgttacaa
gtggtgtgcgtttgtgagagaggatataaaggaagcagatgcgacgaatgtgcctccggc
ttctttggaaaccctgaagaggttggcgggagatgccatccttgccagtgtaacaacaac
atcgattcctctgatccggaggcttgtgacaaaaaaaccgggttgtgtctcaggtgtttg
tttcacacccaaggcgaacactgccaagagtgtaaacctggctactacggatgggctctt
caacaggattgtagaaaatgtgtctgcaactacctcggaacggtgcgtcaccgctgcaac
agctccgaaaactgtgattgcgagaaagaaacgggccagtgtcagtgtctccccaatgtg
gttgggcagaattgcgatcattgcgccccgaacacatggaaactgagcagcgggaccgga
tgcgaaacctgcgcctgtaatcccgagcattcctttggcccgtcttgcaacgagttcacc
gggcagtgccaatgtatgccaggattcgggggacgcacctgtacagaatgccaggaatat
ttctggggtgatcctaccgtgagctgccaagcttgtgagtgtgattcacgaggcatcgag
actctccaatgtaaccggtcaaccgggcagtgcatctgcaaggaaggcatggaaggtctc
cgttgcgacaaatgcacccgaggctactccggaacctttccagactgtgctccttgccat
cagtgctttgccctctgggacgtcatcgtcaccgagttgaccaacaagacacacagattc
ctggaaagagccaaagtcctgaagatcacgggggtgagcggcccctaccgagagaccctc
aactcggtggaggagaagctgaacgagatcaaaagcatcattgctcaaaatccggcgacc
gagccccttaagaacatcggtgacctcttcgaagaagcagagaagctgaaagcagatgtg
gcccaaaaggtaattgaagtggaggaaaagatttctaatgtggcgaacgaaagcagcatc
gcggaggccggactgacagctttggaggccgatgccaagagcttacacaacgctgtgaaa
gaacttgctgagcagctggagttcataaaaatctcggatattcgaggcgccttggacagt
atcaccaaatatttccagatgtcgctggaggcagaaaaaagagcaaacgcctcagttttg
cttcccggcagcctcgttgaacagtctgccgaaatgcgcctagaagtggagagtttgatc
aacgagacggcggccaccttccaggctacccaggaagagcagtcccgtctcttggacgaa
ctggggggcaagctgcaaagtctggatttggctgaagtgtcggagaagatgtgcgggact
ccaccggggtcttcctgtgcagattccccttgtggtgggttgagctgccaaactgaagat
ggggtgaagaaatgtggagggcccgggtgtgaaggtctagtgacggtggccaacaccgcc
tggcagaaagccatcgattttgaccgagacatcttgagcgctctggcggaggtggaacag
ctttccaaaatggtttcggaagccaagcaaagagctgacgaggccaagcagaacgcgcaa
gacgttttgctgaagactaacgccaccaaggagcaggtagaccggagcaacaaggacctc
agaaatctgattcaccagatccgagattttttaatgaaagacggggccgatctggatagc
atcgaagccgttgctaacgaagttctcaacctggagatgcccagcacgcctgagcagctg
caaaccctggcagataacatccgagaccgcgtcgaaagtctgtcagatgtggaaagtgtc
cttcagcaaagcgccggagatatcgcaagggcgaaggccttgttagatgaagctaagaaa
gccagtaaaagcgccacggacgtgaaagtcacggcggatatggtcagacaggctctagaa
gaagctggaagagcccagaccacggctgaagacgccatcaaactagcagagaaagatatt
gaaggaacacaaggcttgcttgcctctattgcatcggagaccggctcagtggaagaccgt
ttgggaaatgcgaccctgcgcattgcagaattagagaagaacgtggaaacgctgagactg
aaggctgcgaccaacgcagaagatatcaaagccgcagaagaaaatattgcagtggttaat
caaacgaccgccgacgttcaaaaaatactagacgacagcgtgagtgagaaatacaaaaca
gtagaaaacttaattgccaagaaaacaggcgagtctgcgaacgccaggaagaaagcagaa
cagctgcaaaacgaagcgaagattttgttagagcaagcaaccagcaaacttcagcttctc
aaagaactggaagacaggtatgaaaaaaatcaaagaatcctggaagacaaagctaaacaa
gtaatggaactggaggaaaccgtcagaggcctcttgcaagccattagtcaaaaagttgcg
atttatagcacctgctag
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