Pituophis catenifer annectens (San Diego gophersnake): 139319560
Help
Entry
139319560 CDS
T11059
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcae03016
]
139319560 (RTCB)
Enzymes [BR:
pcae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139319560 (RTCB)
Transfer RNA biogenesis [BR:
pcae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139319560 (RTCB)
Prokaryotic type
tRNA splicing ligases
139319560 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
139319560
NCBI-ProteinID:
XP_070803559
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQYLDKLDKNCWRIKKGFVPNMNVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDFQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaactacaacgatgaattgcaatatttggataaactggataagaactgctgg
cgcatcaagaaaggatttgtgcccaacatgaacgtggagggtgtgttttatgtgaatgat
cctttggagaagttgatgtttgaagaactaagaaatgcatgccgaggtggaggtgctggt
ggctttcttccagccatgaaacaaattggaaatgtagctgcattacctggtattgttcat
cgatctattggacttcctgatgttcattcagggtatggctttgctattggcaatatggca
gcctttgatatgagtgatccagaagcagtagtttcaccaggaggtgtagggtttgacatt
aactgtggtgttcgattactgaggaccaaccttgatgagtgtgatgtccagccagtgaag
gagcagcttgcacaatccatgtttgaccatattcctgtaggggtgggatccaagggcgtc
atccccatgaatgccaaggatctggaggaagctttagagatgggggtagactggtcctta
cgagagggctatgcctgggctgaggataaagagcattgcgaagaatatgggaggatgttg
caggcagatccaaataaagtgtcggcaagagctaagaaaaggggtttacctcagctgggg
actttgggagcaggaaaccactatgctgagatacaggttgtggatgacatttataatgaa
tatgctgcccgaaagatgggtatagaccataagggacaaatatgtgtgatgatccacagt
gggagcagaggcctaggccaccaagtagctacagatgccttagtagctatggaaaaagca
atgaaacgggacaagatcatagtgaatgaccgccaattggcatgtgctaggatagcttct
caggagggccaagattatttgaaagggatggcagcagctggaaactacgcgtgggtcaat
cgttcctccatgacttttcttactagacaggcatttgctaaagtcttcaacaccacccct
gatgatctggacatgcatgtaatctacgatgtgtctcacaacattgcaaaagtagaacaa
cacgtggtagatggaaaagaacggaccctgttggtgcataggaaaggatcaaccagagca
ttccctcctcaccaccctcttatagctgtcgatttccaactgactggccagccagtgttg
atcggtggaacaatgggaacttgcagttacgtccttactggtactgaacaaggcatgact
gaaacctttggaaccacctgccacggagcaggccgtgcattgtcccgtgccaaatcgcga
cgtaacttggatttccaggatgtgttggacaagttggcagatatggggattgcgatccgt
gttgcttctccaaaactagtcatggaagaagcacctgaatcttataagaatgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagcgattaaactgaggcccatt
gcagtaatcaaagggtaa
DBGET
integrated database retrieval system
