Pituophis catenifer annectens (San Diego gophersnake): 139319761
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Entry
139319761 CDS
T11059
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139319761 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcae03400
]
139319761 (MSH2)
DNA repair and recombination proteins [BR:
pcae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139319761 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
AAA_27
HTH_RNase_II
MCU
bHLH_IRO3
Motif
Other DBs
NCBI-GeneID:
139319761
NCBI-ProteinID:
XP_070803871
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
MSSSAGVVAIKLSSIDGQKVVGVGYVDSLARKLEVSEFADNDQFSNLEALLIQMGPKECL
LPVGETAGDMVKLRQVVQRGGILITDRKKTEFSTKDAVQDLNRLLQSGKKDRVSSAALPE
MDKQVAISSLSVVIKYLELLNDESNFGQFELTTFDLNQYMTLDHAAVRALNLFQDSSEFT
QGTHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNKIEERLDMVEAFMEDGELRQILQEDL
LRRFPDFNRIGKKFQKKATLQDCYKMYQAINQLPNVIQALEKNNGNCNMLLDAIFTKPLK
ELNCDFSNFQKMIDETLDMNTVESHEYLVKPSIDPNLAELRKSMDKLEEKMQGVLKIAAK
ELSLEPGKSIKLECNAQFGHFFRITYREEKVLRNNAKYKILETQKNGVKFSNSALKDINE
DYMKNRKEYEEMQDAVVKEIINVASGYKEPIQILNDVIAQLDAVVSFAHASNAAPIPYVR
PVILEKGQGRIILKASRHPCIEVQDDVAFIPNDVTFEKDKQMFHIITGPNMGGKSTYIRQ
TGVIVLMAQIGCFVPCDSAEVTVVDCILARVGAGDSQLKGVSTFMAEMLETSSILRTATE
HSLIIIDELGRGTSTYDGFGLAWAISEYIASKMKAFAMFATHFHELTALADQIPTVNNLH
VTALTTKETLTMLYRVKKGACDQSFGIHVAELAAFPKHVIECAKAKALELEDFQNIGKSQ
EADEEPAAKRCYREKQEGEQIIQDFLSQVKAMPLTEMSEEEIRTKLKELKDYVLKKNNPF
VNGIISRINGTS
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcagctggtgttgtagccattaagctgtcctcaattgatggacagaaagtt
gttggtgtaggatatgtggattcactggcaagaaaactagaagtatctgaatttgcagat
aatgatcagttttccaaccttgaagcactgttgatacaaatggggccaaaggaatgtttg
ctgccagttggggagactgctggagatatggtgaaattgaggcaggtggttcaaagggga
ggaatcctgatcacggataggaaaaagactgaattttcaacaaaagatgctgttcaagat
ctcaaccgtttgctacaatcaggaaagaaggaccgtgtgtctagtgcagcattaccggaa
atggataagcaggttgccatctcttctctgtctgtagtgattaaatacttagagctgtta
aacgacgagtctaactttggacaatttgaacttaccacatttgaccttaatcagtatatg
accctggatcatgctgctgttagagcccttaacctttttcaggattcttcagaatttacc
caaggaacacattcactggctggattgttaaataaatgcagaacacctcaaggacaaagg
ctagtcaaccagtggatcaaacaaccattgatggataagaacaaaatagaagaaaggtta
gatatggtggaggccttcatggaagatggagaactaagacaaattcttcaagaagatctc
ctccgccgcttcccagacttcaatcggataggaaaaaaatttcagaagaaagctactcta
caggactgttacaaaatgtatcaggcaattaatcaactacctaatgtgatacaggcactg
gaaaaaaataatggaaactgcaatatgctactagatgcgatattcacgaaacctcttaaa
gagctaaattgtgatttctccaatttccaaaagatgatcgatgaaactttggacatgaat
acggtggaaagtcacgaataccttgtcaaaccttccattgaccccaatcttgctgaattg
agaaaaagtatggataaactggaagaaaaaatgcagggtgtcctgaaaattgcagccaag
gaattaagtttggaacctggcaagagtatcaaattagaatgcaatgcacagtttggacat
tttttcagaattacctacagagaagagaaggttctacggaataatgcgaaatataagatc
ttggaaacccagaaaaatggggtgaaattctctaacagtgcattgaaagatattaatgaa
gactatatgaagaacagaaaagaatatgaagaaatgcaagatgctgtagttaaagaaata
atcaatgttgcatcagggtataaagaacccattcaaattctcaatgatgtcattgcccag
ctagatgccgttgtcagttttgctcatgcatcaaatgcagcaccaataccatatgtgcgc
ccagttattctagaaaaagggcaaggaagaattatcttgaaagcttccaggcacccttgc
attgaagttcaagatgatgttgccttcatcccaaatgatgttacttttgaaaaggacaaa
cagatgttccacatcattactgggccaaacatgggaggaaaatcaacttatatacggcag
actggggtgattgttcttatggcccaaattggatgttttgtgccgtgtgactctgcagaa
gtgactgtcgttgattgcatcctggctcgagttggagctggagatagtcaactgaaaggg
gtatctaccttcatggcagaaatgctggagacttcctccatccttaggactgcaaccgag
cattctttgataatcattgatgagttagggagaggaacatcaacatatgatggatttgga
ttggcttgggcaatttctgaatatattgccagcaaaatgaaagcttttgctatgtttgct
actcattttcatgaattgacagcactggctgatcaaatacccactgtaaataatttgcat
gttacagcattaaccacaaaggaaacactgacaatgttgtaccgtgtaaaaaaaggggcc
tgtgaccagagttttggtatccatgtagcagaattagctgcctttcccaaacatgtgatt
gagtgtgccaaggccaaagccctggaactggaggacttccagaacattggaaaatctcag
gaggcggatgaagaaccagctgccaaaagatgctacagggagaagcaggagggtgaacaa
ataattcaagatttcctttctcaagtgaaagcaatgccgttgacagaaatgtctgaagaa
gaaatccggaccaaactaaaggagttaaaggactacgttttgaagaaaaataatcctttt
gtaaatggaatcatttcccgcatcaacggtacctcatga
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