Pituophis catenifer annectens (San Diego gophersnake): 139320553
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Entry
139320553 CDS
T11059
Symbol
HTT
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin
KO
K04533
huntingtin
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcae03019
]
139320553 (HTT)
04131 Membrane trafficking [BR:
pcae04131
]
139320553 (HTT)
03029 Mitochondrial biogenesis [BR:
pcae03029
]
139320553 (HTT)
Messenger RNA biogenesis [BR:
pcae03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
139320553 (HTT)
Membrane trafficking [BR:
pcae04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
139320553 (HTT)
Mitochondrial biogenesis [BR:
pcae03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
139320553 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
139320553
NCBI-ProteinID:
XP_070805026
LinkDB
All DBs
Position
Unknown
AA seq
3071 aa
AA seq
DB search
MEKLMRAFEALRSFQQQQLPPPPPQPSPAPEEPPARPKKELSTSKKDRVNHCLTICENIV
AQSLRNSPEFPKLLGIAMELFLLCSDDAESDVRMVSDECLNKVIKALMDSSLPRLQLELY
KEIKKNGASRSLRAALWRFAELAHLVRPQKCRPYFVNLLPCLTRVSRRPEESVQETLAAA
MPKIMAAFGNFANDSDIKVLLKAFIGNLNSNSPTIRRTAAAATVSICQHSRRTQYFYTRL
LQVLLGLLCPTEEEHPSVLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVIQKETEISPSL
DQLIQVYELSLHYTQHRDHNVVTGSLELLQQLLRTPPPNLLLALTMRGGLLQAGAAEDEI
AGRSRSNSIVELIAKVLSGEETLEEDSEARSQASQVGFAGSGKSELNSELTSTPGVSPAA
SSASDPPGCDIITEQPRSQHVLQSESEISACDLTGATPKADTDDDMLSRSSSQISAIQSE
VNDGTSSPISDSSQTTTEGPDSAVTPSDFSEMILEGGENQYSGMQIGQLQEEEDETANVL
HDETLDPFRNSCLELQRSHLAKTVSHRREPSNGSMEKFGPKEETELADHGIKLSRMKGDI
GGYKDGSAAPLVHCVRLLSASFLLTGEKGALVPDKDVRVSVKALAISCVGAAVALYPEAF
FSKLYKMPAESNKEEREEQSVKDIVNYIDHGDPQIRGTTAILCGTIIYSILVQSCFSVES
WLENIKASTGTLVECVSLLQKSLKDESSVTCKLACIAVRHCIMSLCGSSHSSLGLQLLVD
LLLLRNSSYWLVRTELLETVAEIDFRLIQFLEERDSNLHRGDYHYAGLLKLQDRVLKEVV
ISLLGDEDPRVRRVAAAALVRLVPKLFYSCDAGQTDPVVALAKEQSSVYLKLLMHETPPT
SHFAVSTITRTYRGYNLMPSPADVTVENNLSRVISAVSHALTTSPSRSLTFGCCEALCLL
SSSFPVCTWNVGWHCGFSHPGGMEESQEKSAVGIVGLLLSLLSSVSFPLDLSAHQDALIL
AGNLLAATASKSLQNPWTHSEDEASVPAAKQEDSWVALSDRTLALLVDHLFSHLLKIINI
CSHILDDVVPGPTLKATLPSLTNPPSLSPIRRKAKEKEATEQATVAISPKKTSENSPAPR
QSDTSSSTPPSKSSSTLGNFYHLPSYLKLYDVLKATYANYKVTLDLQNVNEKFGGFLRSA
LDVLSQILELATLQDIGKYVEEILCYLKSCFNKEPVMATVCVQQLLKTLFGTNLASQFDS
WSSNSCRAQAKCQRLGSSSLRPGLYHCCFMAPYTQFTQALADASLRNMMQAEQERDTSGW
FDILQKVSAQLKTGTANMAKHRADKNIIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLD
LLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPSVFFFLVLLSYERYH
SKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFILRGANKADAGKELETQKEV
VVSMLLRLIQYHQVLEMFILVLQQCHRENEEKWKRLSRQVADIILPMLAKQQMQIDSHEA
LGILNTLFEILAPSALRPVDMPLRSMFVTPSTMASVSTVQLWVSGILAILRVLISQSTED
IVLSRIQELSFSPYLISCQTINRLRNGESKVPPTQETSTDEQDRFLPEETFSRFLIQLVG
ILLEDIASKQLNVETSEQQHTFYCQELGTLLMCLIHTFKSGMFRRITAAATKIFTENGPH
GLHFYTLERLNDLVKSMIATHPSLVLLWCQILLLVNYTNSSWWSEVHQTPKRQSLSGAKL
LSPQPSGDPHEEDGGSKLSICNREIVRKGSLILFCDYVCQNLHDSEHLTWLTVNHVQELI
SLSHEPPVQDFISAIHRNSAASGLFIQAIQSRCENFASPTAVKKTLQCLEGIHLSQSGAV
LVLYVDKLLSTPFRVLAHMVDTLACRRVEMLLAASVQNSTVQLPVEELDRIQEYLQNTGL
AHRHQRLYSLLDRFRLTVALETISPSPLVTAHPLDGGNHPDLETLIPDKDWFCSLVRSQC
YTKSAFALPEGAELMNRLPEQELIPFMMHQDFNISLLAPCLSLGGQELSRGLRSHFEAAR
LVTLHQVTEVVNKLPANHQVFQPTQPVGSSPYWNKLSNIYGDPEMFQFAMVLAQALSQYL
VSLSKLPTSLRIPPEKENDIVKFVVMLLEILSWHLARKQVPLSMDLQAVLDCCCLALQQT
ELWNLWASAENSSQASSLIHCTRFILEAVAIEPGNRLLSPEKRKKIQKAGSENERGSQTP
NSESITATCEVVAELVECLQSVLALGHKKNSPIPAFLTPVLRNIIISLSRLPLVNSYARV
PLLVWKLGWSPKPTGEFGTTFPEIPVEFLQEREVFKEFIYRINTLGWTNRMQFEETWASL
LGVLVTQPIVMDQEENQQEEDMERTQINVLAVQAITSLVLSAMTIPLAGNPAVSCLEQQP
RNKTLKALDTRFGRKLNIIRGIVEQEIQEMASKRDNVACHHVYQMWDPVPSLAPSTTGSL
ISHEKLLLQINTEREMGNMSYKLGQVSIHSVWLGNSITPLREEEWGEDEDDESDMPALSS
PPSSPINSRKHRAGVDIHSCSQFLLELYSQWILPSSPNKKTPVTLISEVVRSLLAVSDLF
TERNQFEMMYATLTELRKVHPSEDEILLQYLVPAMCKAAAVLGMDKAVAEPVSRLLESTL
RSTHMPSRIGALHGILYILECDLLDETAKQLIPVITEYLLSNLRGVAHCVNLHNQQHILV
MCAVAFYLIENYPADVGPEFSSGIIQMCGVMLSENEGSTPSVIYHCVIRGLERLLLSEQL
SPPDCEALVKLSVDRVNVLSPHRAMAALGLMLSCMYTGKEKVSPGRSADPHSAAPDSESV
IVAMERVSVLFDRVRKGFPFEARVVTLILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQF
MAKVLYKVFQSLHTTGQSSMVRDWVMLSLSNFTQRTPIAMAMWSLSCFFVSASTSQWISG
ILPHIISRMGKSEQVDLNLFCLVAIDFYRHQIDEELDRRAFQSIFEVVSSPGNPYHRLLT
CLQSIHKITPC
NT seq
9216 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctgatgcgggccttcgaagcgctgcgctccttccagcagcagcagctgccc
ccgccgccgccccagcccagccccgcgcccgaggagccgcccgcccgcccaaagaaggaa
ctgtccacatccaagaaagatcgagtcaatcattgcctaacaatatgtgaaaacatcgtg
gctcagagtttaagaaattctccagaattccccaagctgttggggatcgccatggaactc
ttcctcctctgtagcgatgacgcggagtccgatgtcaggatggtctccgatgaatgtctc
aataaagtgataaaagccttgatggattccagtcttcctagattacaattggaactctac
aaagagattaaaaaaaacggtgcttcccggagtttgcgggctgctctgtggagatttgcg
gagcttgcacaccttgttagacctcagaaatgcaggccgtactttgtgaacctcctgccc
tgcttaacccgggtcagccggcggcccgaagaatccgtgcaagagaccctggctgcggcg
atgcccaaaatcatggcagcgtttggcaacttcgcaaacgacagcgacatcaaggtttta
ttgaaagctttcataggtaatcttaactccaattctccaaccatccgtcggacggcggcc
gcagccacggtgagcatctgtcagcattcacgaaggacgcaatatttttacactcggttg
cttcaagtattgctaggactgttgtgtcccacggaagaagagcaccccagtgtcttgatt
cttggggtgttgctcaccttgaggtacctgatcccgttgctgcagcagcaggtgaaggac
accagcctgaagggcagcttcggggtcatccagaaagaaaccgagatttcgccttccttg
gatcaactcatccaggtgtacgaactgagtctccattacactcagcaccgggatcacaac
gtcgtcaccgggtccctggaactgttgcagcagctcctccggacgcctccccccaacctc
ctcttggccctcacgatgcgcggggggcttttgcaagcgggggcagccgaagatgagatt
gccggccgcagccgcagcaatagcattgtggaactgatcgccaaagtactttcaggagag
gagaccctggaagaggattccgaagccaggtctcaagccagccaggtgggctttgcaggg
tctgggaaaagcgagctgaacagtgaattaacttccacgccgggcgtctcgcccgcggcc
agctcggcctccgaccctccgggttgcgacatcataacggagcaaccccgttctcagcac
gtcttgcaatccgaatcggagatctctgcttgcgatttgacgggcgcgaccccgaaagcc
gatacggacgacgacatgctgagcaggagctccagccagattagcgccatccagtccgaa
gtgaacgacggcacctcgtcgcccatcagcgacagctctcagaccaccaccgaagggccg
gactcggcagtgaccccgtccgatttctctgaaatgattctcgaaggcggagagaaccaa
tactctggaatgcagattgggcagctgcaggaggaagaagacgaaacggccaacgttcta
catgacgagactttggatccgttccgaaattcctgcctcgagcttcagcgatctcattta
gcgaaaactgtgagccacaggagggagccttccaacggcagcatggagaagtttgggcct
aaggaagaaactgaactggctgaccatggaattaagctctccagaatgaaaggtgatatc
gggggatataaggacggaagtgctgcgccattagtccactgcgttcgcctcctgtcggcc
tcttttctgctcaccggagagaagggggctctggtgccggataaagacgtcagggtcagc
gtgaaagctttggccatcagttgcgtgggggcagccgtggccctttacccggaagctttc
ttcagcaaactgtacaaaatgcccgctgaaagtaacaaagaagaaagagaagagcagtcc
gtgaaggacattgtgaattatatcgaccacggagacccccagatcagagggacaaccgcc
attttgtgcggaaccattatttattccatcctcgtccagtcttgcttcagtgtggagagt
tggctggaaaatataaaagcgtccacagggacgctggtggagtgtgtctccttactacag
aaaagcctgaaagacgagtcttcagtcacatgcaaattggcttgcatagctgtgaggcac
tgcatcatgagcttatgcggcagcagccatagttccttggggttgcaattactggttgac
ctccttctcctgagaaacagctcctactggctggttaggacggagcttctggaaacggtg
gctgaaatagattttcggttaatccagtttttggaagaaagggacagcaatctgcataga
ggggattatcattacgctgggctgttaaaacttcaggatcgggttctgaaggaagtggtc
atttctctcctgggcgacgaagatcccagagtcaggcgtgtggccgcagctgctttagta
aggctggtcccaaagctgttctatagttgcgacgcagggcagactgatccggtcgtagct
ctggccaaggagcaaagcagcgtctacttgaagctcctgatgcacgaaaccccaccgact
tcccactttgcagtgagcaccatcaccagaacctacagaggatacaacctgatgccaagt
ccagccgatgtgacggtggagaacaatctttccagagtgatctcggccgtgtcccatgcg
ttgacgacctcaccctccagatccctgacttttggctgctgcgaagcattgtgtcttttg
tcctcatcgtttccggtttgtacctggaatgtgggatggcactgtggtttttctcacccg
ggaggcatggaagagtctcaggagaagagcgcagttgggatagttggcttgctgctctcc
ctcctttcctccgtttcgttccctctggatctctctgcccaccaagacgccttgatcctg
gctgggaatttgctggcagccaccgcctccaaatctttgcaaaacccctggacgcacagc
gaggacgaagccagcgttcctgccgctaagcaagaggactcgtgggtggccctgtcagac
cggacgcttgccctgttggtcgatcacctgttttcccatttgctgaagatcattaatatt
tgttcccacatattggatgatgtcgttcctggcccaacactaaaggcgacgttaccatct
ctcaccaacccaccttcgctgagtccaattcggcgcaaagcgaaagaaaaagaagcgacg
gagcaagccacggtcgccataagccctaaaaagacgagtgaaaacagcccagctccgaga
caaagtgacacttcaagctccactcccccgagtaaatcctcgtccactctgggtaacttc
taccatctcccgtcgtatctcaaactctacgacgttctgaaggccacctatgccaactat
aaggttacactcgatctccaaaacgtcaatgaaaagtttggtggattcctgagatcagct
ttggacgttctgtctcaaatcttagaactggcaactctacaagacattggaaagtatgtg
gaagaaattctgtgttacctgaaatcctgtttcaacaaagaaccagtcatggcaactgtg
tgcgttcagcagttactcaagaccttgtttggcaccaacttggcctcgcagtttgacagc
tggtcttccaactcctgccgagctcaggccaaatgccagcgcttgggctcctccagctta
cggccgggtctttaccactgctgcttcatggctccttacacccagttcacccaggccttg
gccgacgccagtttaaggaatatgatgcaggccgagcaggaacgggacacctcaggctgg
tttgacatattgcaaaaggtttctgcgcagctgaaaactggcaccgcgaatatggccaag
caccgtgctgataagaatatcatccacaatcacatccgtctgtttgaaccgctggtcatc
aaagcgctaaagcagtacactaccactacgtccgtacaactgcagagacaagtcttggac
cttctcgcccagctcgtccagctgcgggtcaactattgtcttctggactccgaccaagta
tttattggatttgtgctgaagcagtttgaatacattgaagtcggccaattcagggaatca
gaggccattattccgagtgtctttttcttcctggtgttgttgtcttacgagcgctaccac
tccaagcagatcattggaatccctaaaattattcagctctgtgacgggatcatggccagc
ggaaggaaagcagtgacacacgcaatcccggctctgcagcccattgtccacgatctcttc
atcttaagaggagcgaataaagccgatgccggcaaagaattagaaacccagaaggaagtc
gtggtctcgatgttgttgcggctcatccagtatcaccaggtgctggagatgttcatcctt
gtgctgcaacagtgtcaccgagagaatgaagagaaatggaagaggctgtcgcgacaggta
gccgacatcatcctgccaatgctggccaaacaacagatgcaaatagattcccacgaagcc
ctggggatcttgaataccttgtttgagatcctggcgccttccgccctgcgcccggtggac
atgccgctgaggagcatgtttgtgacgcccagcaccatggcttcagtgagcaccgttcag
ttatgggtctctggcattctggctattctgcgggtcttgatttcccagtccaccgaagac
atcgtcctctcccgcatccaagagctctccttttccccgtatctcatctcttgccaaaca
atcaaccggctgcggaacggggaaagcaaagttcctcccactcaggaaacctccacggat
gagcaagatcgctttcttcccgaagagaccttttccagattcctcatccagttggtgggg
attcttctggaagatatcgccagcaaacaattgaacgtggagacgagcgaacagcaacac
accttctactgccaggaactgggcacccttctcatgtgcttaattcataccttcaaatca
gggatgttccgaagaatcacggctgcggcgaccaagatttttaccgagaatggaccgcac
ggtcttcatttctacaccctcgaaagattaaacgatcttgtcaagtccatgatagccacg
cacccatccctggtgcttctctggtgtcagatcctgctgcttgttaactacaccaattcc
agctggtggtccgaagttcatcagaccccgaaaaggcagagtctgtcaggcgctaagttg
ctcagccctcaacccagcggggatccccacgaagaagacggcggctccaagctcagcatc
tgcaaccgcgagatcgtgaggaaaggatccctcatccttttctgtgactacgtgtgccaa
aacctgcacgactccgagcacttaacctggctgaccgtcaatcatgtccaagaactcatc
agcctgtctcacgaacctcccgtccaggatttcataagcgccattcacagaaactcggcg
gcgagcggacttttcatccaggctattcagtcacgatgtgagaacttcgcctccccgaca
gcggtgaagaagaccctgcagtgtttggaggggatccacctgagccagtcaggagctgtg
ctggtcttgtacgtggacaagcttctctcgactcccttccgtgtgctggctcacatggtc
gacaccctggcttgccgtcgtgtggaaatgcttttagcggcgtccgtgcagaacagcacg
gttcagttgccagttgaagagctggaccgaattcaggaatatctgcagaacaccggatta
gcccacagacatcaaagactctactcactcttggaccggtttcgtctaactgtggctctg
gaaaccataagcccctcacctttggttacggcacatcccctggatggagggaaccatccc
gatctagaaacgttaattccagacaaagattggttctgttcactcgtgaggtcccagtgc
tacacaaaatcagctttcgctcttccagaaggggccgaactgatgaatcggcttccagaa
caggaattgattccttttatgatgcaccaggatttcaacatcagcctcctcgccccgtgt
ttgagcctgggcgggcaggaactctcccgagggctgaggagccattttgaagccgcccgc
ctggtcacgctgcaccaggtgaccgaagtggtgaacaaactccccgccaaccatcaagtc
ttccagccgacgcagccggtgggatcgtccccgtactggaacaaactcagcaatatttat
ggagacccagaaatgtttcaattcgcaatggttttagctcaggctttaagtcagtatctg
gtgtcactttccaaactgccaacttcccttcgcattcctccggagaaggaaaacgacatt
gtgaagttcgttgtgatgctgctagagatcctgtcttggcacttagcacgcaagcaggtt
cccctaagtatggatctccaggctgtgctggattgctgttgcctggcgttgcaacagacg
gagctgtggaatctctgggcatcagcagagaacagcagccaggcctcctccctcatccac
tgcacccgattcatcctggaagcagtggcaattgaaccaggaaatcgtctgctgagtcca
gagaaaagaaagaagattcagaaggctggcagtgagaacgaaagaggttcacaaacacca
aattctgagtccattacggcaacttgtgaagtggtagccgagttggtagaatgcctgcag
tctgtcttggctctggggcacaagaagaacagccccatccccgcattcctgacccccgtc
ctgaggaacatcatcatcagcctgtctcggctgccattagtcaacagctacgcccgggtt
cccctcctggtctggaaattgggctggtccccaaagccgacaggtgaattcggcacgacg
tttccagaaatcccagtggaatttctccaagagagagaagtcttcaaagaatttatctac
cgaattaacacattggggtggaccaaccgcatgcagtttgaggaaacctgggccagcctc
ctgggagttcttgtgacccagccgatcgtcatggatcaggaggaaaaccagcaagaggaa
gacatggaaaggacccagatcaatgttctggctgttcaggcaatcacctccttggtgctg
agcgccatgaccatccctctggccggcaatccagccgtcagctgtttggagcagcagcct
cgaaacaaaaccttgaaagctcttgacaccaggttcgggagaaaattgaacattatccga
ggaattgtcgagcaagaaatccaagaaatggcctctaagagagacaatgttgcttgccac
catgtatatcagatgtgggaccctgttccgtccctggccccctctaccacaggttccctc
atcagccacgagaagctgctgcttcagatcaatacggagcgtgaaatgggaaatatgagc
tacaaactaggacaggtctccatccattctgtgtggctgggaaatagcattaccccgttg
cgggaagaagaatggggcgaagacgaagatgatgagagcgacatgcctgccctttcctcg
cccccttcctcccccatcaattccaggaagcaccgcgctggggtagacattcattcgtgt
tcccagttcctgctggaattatacagtcaatggattctcccatccagccccaacaagaag
acgccggttaccctgatcagcgaagtggtccgatcccttttagccgtctctgacttattt
acggagagaaatcagtttgaaatgatgtacgcaacgttaactgaactgcggaaagtccat
ccgtcggaagacgagatccttcttcagtatttggtccccgctatgtgcaaagcagcagct
gttcttggcatggataaagcggtggcggagcccgtcagccgcttgctcgaatcgacgctc
cgcagcacgcacatgccgagccgaattggcgcgctgcacggcatcctgtacattttggag
tgcgatctcctggacgagacggcgaagcaacttattccggtcatcaccgaatacctgctt
tccaatctgcgtggcgtagcccactgtgtgaatctccacaaccagcaacacatcttggtc
atgtgcgcagtggccttctacttaatcgaaaattacccggctgacgtcggacctgaattc
tcttccggaattattcagatgtgcggagtgatgctatccgaaaacgagggatccacccca
tcggtgatctatcactgtgtgatcagaggtctggaaaggctcctgctttcggagcagctc
tctccgccggactgcgaagcgctggtgaaactgagcgtggaccgggtgaacgtcctcagt
ccgcacagagccatggccgccttgggactcatgctgagctgcatgtacacaggaaaagag
aaagtcagtcccggacgaagcgctgatccccactcggcagctccggacagcgaatcggtc
atcgtggcaatggagcgagtatctgtcctctttgaccgggtcaggaaaggattccccttc
gaagcccgagtggtaactctgatcctccctcaattcctggatgactttttccccccgcaa
gacgtgatgaataaagtgattggggaatttttatccaaccagcaaccctacccacaattt
atggcgaaagtactctacaaggtctttcagtccctgcatacgacgggtcagtcctccatg
gtccgagactgggtgatgctgtcgctctccaacttcacgcagcggacgccgatcgccatg
gcgatgtggagcctttcctgttttttcgtcagcgcttccaccagccaatggatttcagga
attctcccacacattatcagcagaatgggaaaatcggaacaagtcgacctcaatttgttc
tgcctggtggccatagatttttacaggcatcagatcgacgaagaattggatcgcagagcc
tttcagtccatcttcgaagtggtctcttccccgggaaatccgtaccaccgcctgctgacc
tgcttacaaagcattcacaagatcaccccgtgttga
DBGET
integrated database retrieval system
