Pituophis catenifer annectens (San Diego gophersnake): 139320581
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Entry
139320581 CDS
T11059
Name
(RefSeq) protocadherin-23-like
KO
K16507
protocadherin-16/23
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
139320581
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pcae04515
]
139320581
Cell adhesion molecules [BR:
pcae04515
]
Cadherins
Cadherin related
139320581
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Cad99C_N
Cadherin_2
Ig_CLSTN
Gleo_Verruco
Motif
Other DBs
NCBI-GeneID:
139320581
NCBI-ProteinID:
XP_070805059
LinkDB
All DBs
Position
Unknown
AA seq
2101 aa
AA seq
DB search
MGRVFNAPASGKEIEESMELRCLALKMRKRRRKLRGRPALKPWIAGRWPIPLWFCLCIAG
ECSAQVYHLSLGVEEELPADTLVGDISAGLPPGEAHPGGFFLSEGSGESALFADFHVHTD
TGLILTARPLDRERTARYSFAAATPRGAILQVEIAVADVNDHAPRFPQDLAHLGVSELSP
PGSAFRLPAARDPDEGSFGLQGYSLLPWGQDGSAEEEEAPFFQVRYGAPSDPLELLLLRR
LDREQAATHRLLVEAWDGGSPRRSGRLGVEIQVLDENDNAPAFGQREYRARLREDAPAGT
SVCRVCATDPDLGVNGEVRYALSRRQGDSSAEIYFEVGERSGLLRLRRPLDRELRASHRL
AVEARDGGAQPEMATAWVSVEVLDVNDNPPVIRLLYLTEAGAKISEGARSGDYVARVSVS
DPDEQPGGRGGGVTLSLEGGEGAFSLRRSGDGGVYFLCVDGPLDRETRQAYELRLTAVDA
GVPPLSSRHVLAFRVADRNDQAPAFAQPRYRATVSEAASPGAVVLRLSASDADEPGSRNS
QVRYALAPSQPHGALFHLDPLSGVLSLRAALDREREALVQLWALARDLGAPPLSASCLVS
VAVADANDNEPVFKRQVYNVSLAEHSEVGYCLLQVTATDQDSGYFGYIEYFLYNGFHSYE
KLEAFQIDVNTGCIYASQDIDREEDPSTYDLLVKAIDGGGLSAQAFVHIVIEDINDNLPI
FNPVIYVINISSHTQPGTEITKLLATDKDSGLYGTVTYKLVPGYFSSLFKVDPSTGTVYL
ISSLTNADCSSVLLIVSAQDGGGLRSDVDADVTVGIFQTAVAPAVFEHSSYSFSITEDAP
EGSSVGTVKARKPLNFLDTVSYRISSGNSHGIFTIDSHSGIIHTKKQLDHETYDHILLTV
QSQLGSSSIFSSAQVNITLIDINDNHPVFMIEYDQIYLSQSMLPGTALYIAHAEDKDSGL
NGLIRYAIVSSQSSIFTIDPALGILYLTRDLSGHKQHEHVVVHIIAEDHGNPSLSSVLIL
GVLIDKQKGSPVLTFEKLLYQVEVSERSCLGARILQIRAWKLNSHHISSTLTYSLEHNID
SVSFKIDPETGMVYLHNPLDYEHLQTHTFRAFVTSPMDKSVQNASTLIIISVIDENDNSP
VFLHDVYFIEVEERVLPQGVIGTIKAIDKDSGRNGQLSYFILSNDNYFRINSNTGEIINW
VALDYEQQVQHHLIALVTDHGVPQLNATVSVYISVMDVNDNRPCFSQDLLRFKVLERQPA
GTRVASIFAKDLDSGNNGIVLYLLSSEESLGHFQIDSSSGELRTTKALLYNWHSSYRMVI
KAIDKGDPSLQGETVINIEVIPLGKGISYSSQYIRHFAIPEDFRPGQVMGSLKLPDQHLY
PNRKQHFIIPEEDSDIPFEIDNATGNLFLSKALDYEAISHYFFRVVVTDCLNSSPQNETV
FLSIDVEDQNDYSPFFQNDFIVIGIEENVPVGTLVYTFSARDGDGSFLSRNLQYSMHSNY
LTENSFFIHPIYGTLITAVSLDREITPFFVLTVLASNQAVSLTEHNQCSLTAKIVILDVN
DNSPSFVSSPVSYIREDAEVGSIAHHIIAHDPDQGMNGQVTYLLSSNEDHAFFIDKATGV
LTTVFVLDRENQEYYTLKVVALDNGNPALSATQNLIVIVLDVNDEAPIFTKAIYEASVWE
NSAPGVLGIKVEAIDKDSGINSLLKYDILPGPAYENFQINSSTGEIRTTTSLDREIREVL
HIKVLVQDGGTPSLSSTASIIFRVLDENDHTPKIIFPASDIQILENQLPSTITTLLAVDD
DIANNGIVQYQIIGGNTGGHFALHKTTGDLFTTCSLDREIVNNFTLVIECFDLGNPARSS
VMELQIRVLDENDNSPSFTRNHYQAIISEDIEEKSSILELFAADADEGPNGKVVYALMDE
TLGLFTINRTSGVVITNKPLDRERQSQYIFKGIATDSDVRQPRSASVTIIIQIEDVNDNN
PFFLENPLKVQVSSQTPVNQAIATVQSRDLDLGLNGTVKFRFVTPATVFEMDSNTGEIFL
REPVSYDGLFTHLLIVACDQGIPARTATAVVIISSKAHMEIISFSHTQYEAVVPENSEMD
L
NT seq
6306 nt
NT seq
+upstream
nt +downstream
nt
atgggcagagtgtttaacgcaccagcttcgggcaaagagatcgaggagagcatggagctc
cggtgtctcgccttgaagatgaggaagagacggaggaagctgagggggcgaccggccctt
aagccgtggatcgccgggagatggccgatcccactgtggttctgcctatgcatcgcgggg
gagtgttcagcccaggtgtaccacctcagcttgggagtggaggaagagctgccggcagac
actctggtgggggacatcagcgcagggctgccccccggggaagcccaccccggtgggttt
ttcttatcggaaggcagcggggagtccgccctgttcgcggatttccacgtgcacaccgac
accggcctcatcctgaccgccaggcccctggaccgcgagcggacggcgcgctacagcttc
gcggcggccacgccgagaggggcgatcttgcaggtggaaatcgccgtcgccgacgtgaac
gaccacgctccccgcttccctcaggatttggcgcatctcggcgtctccgagctcagcccg
cccggcagcgctttccgcttgcccgccgcgcgcgatcccgacgagggaagcttcggcctc
caaggctactccttgctgccgtggggtcaggacggctcggcggaggaggaagaagctccg
tttttccaggtgcgctacggcgctccctcggaccctctggagctgctcttgctgagacgg
ctggatcgggagcaggcggctacccatcggttgctggtcgaggcttgggacggcggcagc
cctcgccggagcggacgcctcggggtagagatccaagtgctggatgaaaacgacaacgct
cccgctttcgggcaacgcgagtatcgcgcccgcctgcgggaagacgcgccggcgggaacc
tccgtgtgtcgggtttgcgccaccgacccggatctgggtgtcaacggggaggtgcgttac
gctctcagccgccgccagggagactcctccgcggagatttacttcgaggtgggcgagcgc
agcgggttactccgtttgcgccggccgctggatcgcgagctgcgcgccagccaccgcctg
gctgtggaagctcgcgacggcggcgcccagcccgaaatggccaccgcctgggtctccgtg
gaagtcctcgacgtgaacgacaacccgccggtcattcggttgctctacctcaccgaggcc
ggcgccaaaatctccgaaggggcgcggtcgggggactacgtagcccgcgtgtccgtctcc
gaccccgacgaacagccgggaggaagaggaggcggcgtgacgctgagcctggaaggcggc
gaaggcgccttttcactgcggcgctctggcgacggcggcgtctatttcctatgcgtcgac
ggtcccttagaccgggagacccgtcaggcttacgagctccgcttgacggccgtcgatgcc
ggcgtcccgccgctctcctcccgccacgtgctggccttccgcgtggccgaccgaaacgac
caggctcccgccttcgcccagcctcgctaccgcgccaccgtctccgaagccgcctcgccc
ggcgcggtggtcttgcgcctcagcgcttcggatgccgacgagccgggctctcgcaacagc
caggtgcgctacgccttggctccctctcagcctcacggcgcgcttttccacctcgacccg
ctcagcggcgtcctgagtctccgagccgcgttggatcgcgagcgggaagcgctggtgcag
ctatgggcgctggcccgggacttgggcgcgccgcctctgtctgcgtcgtgcctggtgagc
gtcgccgtcgcggatgccaacgacaacgaacccgtcttcaaacgccaagtctacaacgtg
agcctggctgaacactccgaggtcggctactgcctcttgcaggtaactgcaacagatcaa
gattcaggctattttggatatattgaatattttctttataatggattccatagctatgaa
aaattggaagcatttcagattgatgtaaacactggctgtatatacgcgtctcaggatatt
gacagggaagaagatccatctacctatgatttattagtaaaagccattgatgggggtgga
ctaagtgcccaagcttttgttcacatagtaattgaagatataaatgacaatcttcctatc
ttcaaccctgtaatttatgtgataaacatcagcagtcatacacagccaggaacagaaata
actaaacttcttgctacagataaagattctgggttatatggaactgtgacatataaactg
gttccgggatatttttcttcccttttcaaagtggacccatctacaggaactgtttatttg
atatcatccctgactaatgcagattgttccagtgtgctgctgattgtttctgctcaggat
ggtgggggtcttaggtctgatgttgatgcggatgtaactgtggggatctttcaaactgct
gtggctcctgctgtctttgagcactcatcttacagcttttccatcactgaagatgcccct
gaaggaagttctgttggaacagtgaaagcaagaaagcctttgaatttcctggataccgtt
tcttatagaatttcctctggcaattcccatggaatttttactattgattctcacagtgga
atcatacacaccaaaaaacaacttgaccatgaaacatatgatcacatacttcttacagtg
cagtcacaattgggaagctcttccatcttcagcagtgcccaggtcaacataactctgatt
gatatcaatgataaccatccagtatttatgatagaatatgatcaaatatatctatctcaa
agcatgctacctggaacagctctttatattgctcatgcagaagataaagacagtgggctc
aatgggctcatccgttatgccattgtaagcagtcagtcaagtatttttactattgatcca
gctcttgggattctttaccttactagagatctgagtggtcataagcagcatgaacatgta
gtggtacacatcatagcagaagatcatggaaatccttccctgagctctgtgttgattttg
ggagtgctaattgacaaacaaaagggaagtcctgtgttgacttttgaaaagttgttatat
caagtggaagttagtgaaagatcctgtttaggtgccagaatcctgcaaataagggcctgg
aagctaaattcccatcacatttcttctactcttacatactctttggaacataacatagat
tctgtttcttttaaaattgatccagaaacaggcatggtttacttacataatcctttagac
tatgaacatttgcaaactcatacttttagagcttttgttactagcccaatggataagtca
gtacaaaatgcaagcacattaataataatcagtgtaattgatgaaaatgataactctcct
gtgtttcttcacgatgtctattttattgaagttgaggaaagagtattaccccaaggtgtg
attggcacaattaaagcaattgacaaggactctggaagaaacgggcagctctcctacttc
atcttatcaaatgacaattatttcagaatcaattccaatacaggggaaattataaactgg
gtggcattagactatgagcagcaagttcagcaccatttgatcgctctggtaacagaccat
ggagtccctcaacttaatgctaccgtatctgtctatatctcagttatggacgtcaatgac
aaccgtccatgcttctctcaggatctgctacgtttcaaggttttagaaaggcaaccagca
ggaacacgagtggccagtatatttgccaaagaccttgattctggaaacaatggaatagtg
ctgtatttgttatcctcagaagaaagtttaggtcattttcagattgacagcagtagcggt
gagttaagaactaccaaagctcttttatacaattggcattcaagctatcgaatggtaatc
aaggcaattgacaagggagatccttctcttcaaggggaaacagtcatcaatattgaggta
atacctcttggcaaaggaatttcttattcttctcaatacatcagacattttgccatacca
gaagattttagacctggtcaagtcatgggctctttaaaactccctgatcagcatttatat
cccaacagaaaacagcattttattatccctgaagaagattctgatattccatttgaaatt
gataatgctacaggcaatctctttctttctaaagcacttgattatgaagcaatatctcac
tacttcttcagagttgttgtaactgactgtctaaacagttctccacagaatgagactgtt
ttcctcagtattgatgttgaagatcaaaatgactactcaccttttttccaaaatgacttt
attgtaattgggatagaggaaaatgtgcctgttggtactttggtgtatacatttagcgca
agagatggagacggtagttttttaagcagaaatcttcagtattcaatgcatagtaattac
ttgacagaaaattcatttttcatccatcctatttatggtaccttaattacggcagtatct
cttgatcgagaaataactccattttttgtcctgacagtattggcttcaaatcaggctgta
agcctgactgagcataaccaatgttcactgacagcaaaaattgtcattttagatgtcaat
gataacagccctagctttgtttcatctcctgtttcctacattagagaggatgcagaggta
ggctcaatagcacatcacataatagcacatgatccagaccaaggaatgaatggacaagtc
acatatcttctctcaagcaatgaagaccatgcctttttcatagataaagctactggagtg
ctaacaacagtctttgttctggaccgtgaaaaccaagaatattataccttgaaggttgtt
gctctcgataatggcaatccagctctatctgccactcagaacctgatagtaattgttctt
gatgtaaatgatgaagcacccatatttaccaaagctatatatgaagcttcagtctgggaa
aatagtgccccaggagtgcttggcatcaaagttgaagcaatagataaagattcaggaatc
aattccctacttaaatatgacatattgccaggacctgcatatgagaattttcagataaac
tcaagtactggagaaattagaacaaccacctcgcttgacagggaaattcgagaggttctt
catattaaagtgcttgttcaagatgggggcactccctctttatccagtacagcatcaatt
atctttagggtactagatgaaaatgatcatactcctaagatcatctttccagcttctgat
atccaaatattggagaaccaactgccttcaacaataacaactctcctggctgtggatgat
gatatagctaataatggaattgtgcaatatcaaataattggtggtaacaccggaggacac
tttgctttgcacaaaaccacaggagaccttttcactacttgcagtttggacagagagata
gtcaacaattttaccttggtcatagagtgttttgatctaggcaatccagcaagaagttct
gttatggaactacaaatcagagtcttggatgaaaatgacaacagtccttcatttacaaga
aatcattatcaagcaattataagtgaagatattgaagaaaagtcatcaattcttgaactg
tttgctgcagatgcagatgaaggtccaaatggaaaggttgtgtacgctctaatggatgaa
actcttggattgtttactattaacagaactagtggtgttgtcattactaataaaccattg
gaccgagagagacaatctcaatatatatttaaaggtatagcgacagattctgatgtccgg
caaccaagaagtgccagtgttactataataatacagattgaagatgtaaatgacaataat
ccttttttcttagagaatcctcttaaagttcaagtgtcctctcaaacacctgtaaaccag
gcaatagctactgtgcaatccagggacttagatttaggtctgaatggaactgtgaagttt
cggtttgtgacaccagccacagtgtttgagatggattcaaatacaggtgaaatatttctt
agggaacctgtatcttatgatggcttattcacccacctcctgatagtagcatgcgatcaa
gggatcccagctagaactgctacagctgttgtgatcatctcttctaaagctcacatggaa
attatttctttcagtcatactcaatatgaagcagtggttcctgaaaacagtgaaatggat
ctgtga
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integrated database retrieval system
